mitoNGS MToolBox issues

mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data

http://sourceforge.net/projects/mtoolbox/?source=navbar

GNU General Public License v3.0

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issues

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cat: test.lst: No such file or directory

#114 StavroulaPetr opened 1 month ago
0
trouble while trying test example

#113 snackens closed 1 month ago
0
Update install.sh

#112 ulloaa opened 4 months ago
0
"No module named pandas" although pandas installed

#111 bengisukb opened 9 months ago
0
.py files "command not found"

#110 SamiaPT opened 9 months ago
0
How to compliance with hg38 reference panel

#109 Pilibeibei opened 1 year ago
0
Getting Error in "ASSEMBLING MT GENOMES WITH ASSEMBLEMTGENOME..." step

#108 Nirmal2310 closed 2 years ago
4
Do you have an mtoolbox docker container publically available?

#107 ulloaa opened 2 years ago
5
Getting Error in "ASSEMBLING MT GENOMES WITH ASSEMBLEMTGENOME..." step

#106 Nirmal2310 closed 2 years ago
1
re-mapped the variant to the rCRS reference sequence

#105 WZo0o opened 2 years ago
0
no vcf file after completing mtoolbox.sh

#104 Pilibeibei opened 2 years ago
2
no *annotation.csv after using variants_functional_annotation.py

#103 Pilibeibei opened 2 years ago
0
assembleMTgenome.py line 484 isssue: ValueError: I/O operation on closed file

#102 Pilibeibei closed 2 years ago
0
pandas issue with python2.7

#101 Pilibeibei closed 2 years ago
0
HGVS named method in annotation.csv

#100 choumeijiao opened 2 years ago
0
mapExome.py not match

#99 Pilibeibei closed 2 years ago
5
Install MToolbox samtools error

#98 Phillip-a-richmond opened 3 years ago
1
Out of memory error

#97 halimaalachram opened 3 years ago
0
Unable to compute haplogroup. Exit - No annotation.csv found. Exit

#96 moldach opened 3 years ago
0
Can't generate VCF output

#95 simm2006 opened 3 years ago
1
Can`t Install

#94 flight7777 closed 4 years ago
0
Can`t install MToolBox, it can`t find setup.sh after setting the PATH

#93 flight7777 opened 4 years ago
0
Is there any gold standard variant calls for mitochondria?

#92 mtorralvo opened 4 years ago
1
java command not found

#91 EricDeveaud closed 2 years ago
1
RCRS vs RSRS output

#90 sremuk opened 4 years ago
2
BAM vs FASTQ as input

#89 sremuk closed 4 years ago
1
./MToolBox.sh: line 346: java: command not found

#88 smukh18 closed 4 years ago
2
Issue with check_files.py during installation

#87 robertopreste opened 4 years ago
3
No such file or directory: 'VCF_dict_tmp'

#86 PengZhangJHU opened 4 years ago
2
vcfoutput bug

#85 Pilibeibei opened 4 years ago
5
'None' genotypes

#84 cefrnch closed 4 years ago
3
Unable to compute haplogroup when using RCRS

#83 Pilibeibei opened 4 years ago
2
Unable to compute haplogroup

#82 Ssocarrat opened 4 years ago
3
Add hook to ReadTheDocs

#81 domenico-simone closed 4 years ago
0
My VCF contains virtually no 1/1 genotypes

#80 mocksu opened 4 years ago
1
Switched HF in high depth samples

#79 jalwillcox opened 5 years ago
1
.fastq files stay uncompressed for a long time if input is bam

#78 dwuab opened 5 years ago
2
No annotation.csv found

#77 Nikeeta-C closed 4 years ago
1
Select the MAF

#76 ndierckx closed 5 years ago
5
summary.py fails when samples with 0% coverage are present

#75 psterk opened 5 years ago
0
bug in prioritized_variants.py

#74 psterk opened 5 years ago
1
Mtoolbox.sh, issue with large number of samples

#73 psterk closed 5 years ago
1
MToolBox-f527c5c, assembleMTgenome.py

#72 3i-v opened 5 years ago
4
Fasta used for haplogroups prediction (MToolBox_fixes branch)

#71 domenico-simone closed 4 years ago
0
MITOMAP and ClinVar annotation updates

#70 francisjean opened 5 years ago
2
Can MToolBox run on nanopore data(long read sequencing)?

#69 pradyumnasagar opened 5 years ago
1
Heteroplasmic fraction

#68 Madelinehazel opened 5 years ago
1
Please fix error with fasta input and list assignment

#67 WeiWei060512 opened 5 years ago
0
why is there no HF information and reference sequence for the prioritized variants file??

#66 Confurious closed 4 years ago
1
parts of MToolBox don't use bundled dependencies

#65 0xaf1f closed 4 years ago
0