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Hello,
I'm really sorry, but my testing wasn't as thorough as I had first believed.
When saving a model with sofa.utils.utils.save_model() one of the functions used is save_as_mudata(self); look…
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Functions like `from_path` and `from_anndata` should only be added if the class is an Artifact Registry.
We probably need a
```r
create_registry
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**Is your feature request related to a problem? Please describe.**
Classes that subclass AnnData can also profit from the internal organization from MuData.
**Describe the solution you'd like**
One c…
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**Describe the bug**
Running into an import error, seems like its limited to Python 3.9. Python 3.9 EOL is 2025. Is there a reason why the package only supports 3.10 and above. Atleast thats my under…
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I'm working with a scCRISPR dataset from another group, I can open it with muon but not with MuData (1.8.0). Some details below. Thanks for taking a look!
```
wget -O inference_mudata.h5mu "https:…
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I created my own chromsize.tsv:
it looks like
Chromosome Start End
0 chr1 0 248956422
1 chr2 0 242193529
2 chr3 0 198295559
3 chr4 0 19…
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Will this help mi with labeling clusters?
Workflow:
1. output from RDS/seu_singlet-clustered-27nov2024.rds (SCT + leiden)
2. save as anndata (rna and adt as separate anndata files)
3. in python:…
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**Describe the bug**
"Hi, I am trying to use region_to_gene in the Snakemake pipeline, but I encountered an error: 'ValueError: Input y contains NaN.'"
**To Reproduce**
```bash
scenicplus grn_…
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First, I think documentation could be improved for such a basic function, second, I think it should take similar arguments to `anndata.read`.
MUCDK updated
2 months ago
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https://mudata.readthedocs.io/en/latest/