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First, I think documentation could be improved for such a basic function, second, I think it should take similar arguments to `anndata.read`.
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This is the current implementation of writing metadata in JSON format for ingest into HuBMAP infrastructure:
```python
def extract_metadata_write_json(mdata: mudata.MuData, output_json: Path):
…
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Hello-
We're publishing some data as MuData in the HuBMAP consortium, and we're also planning to use it to store descriptions and annotations of objects in segmentation masks.
These descriptions…
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https://mudata.readthedocs.io/en/latest/
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**Is your feature request related to a problem? Please describe.**
Reading and writing MuData is a bit slow sometimes. For example, after doing some TCR sequence analyses the MuData takes longer to r…
racng updated
2 months ago
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Dear SCENIC+ team,
I am using SCENIC+ and it crashed in tf_to_gene step. The error log is as follows:
```bash
Assuming unrestricted shared filesystem usage for local execution.
Building DAG …
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We should have a nicer repr for the anndata object. Ideally a rich one with more info and collapsibility. [`mudata` already has this implemented](https://muon.readthedocs.io/en/latest/notebooks/quicks…
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**Describe the bug**
mudata v.0.2.3 version, anndata v0.9.2, calling mudata.update(), causing anadata data update failure, confirming that there are no duplicate data in the original data, generating…
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Dear muon-team,
I have converted my scATAC-seq SeuratObject to a mudata object but the information on the fragments files does not seem to be transferred. mdata.uns is empty.
My object is a merge…