vitessce vitessce-python issues

vitessce / vitessce-python

Python API and Jupyter widget for Vitessce

https://python-docs.vitessce.io

MIT License

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issues

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SpatialData changes into original SpatialData branch

#374 keller-mark opened 1 day ago
0
Ig/spatial data

#373 keller-mark opened 1 day ago
0
Merge. Update spatialdatawrapper

#372 keller-mark closed 1 day ago
0
Allow passing artifacts as data in addition to paths, urls, and zarr stores

#371 keller-mark closed 1 day ago
0
Keller mark/more exports

#370 keller-mark closed 4 days ago
0
Add minimal example notebook that demonstrates multi-obsType segmentations

#369 keller-mark closed 4 days ago
0
Added utility functions to update and remove a view

#368 tkakar closed 4 days ago
4
Fix invoke bug

#367 keller-mark closed 2 weeks ago
0
`layout.to_dict()` throwing: `TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'`

#366 ivirshup opened 2 weeks ago
0
Updated numpy to 2.0.2 and other packages to the latest

#364 tkakar opened 2 weeks ago
3
Fix binder example

#363 keller-mark closed 3 weeks ago
0
Enable `numpy` v2 Support/Unpin `numpy` v1

#362 NickAkhmetov opened 3 weeks ago
0
Support for H5AD-based AnnData in AnnDataWrapper

#361 keller-mark closed 3 weeks ago
0
Misc: Spatial-query, kerchunk, and OME helper functions

#360 keller-mark closed 1 month ago
0
Command functions should be able to return an updated config

#359 keller-mark opened 1 month ago
1
Vitessce python on remote jupyter servers do not work

#358 edwin5588 closed 3 weeks ago
3
Unit test for to_dict output following .add_object(AnnDataWrapper(...))

#357 keller-mark closed 1 month ago
0
Warn if AnnDataWrapper options are empty as it would result in empty list for `vc['datasets']['files']`

#356 falexwolf opened 2 months ago
4
page_mode and page_esm params

#355 keller-mark opened 2 months ago
0
Plugin for SpatialQuery

#354 keller-mark closed 2 months ago
0
Update fill_template.py

#353 keller-mark closed 2 months ago
0
NickAkhmetov/Copy `requestInit` when using `from_dict`

#352 NickAkhmetov closed 2 months ago
0
Ability to use comparative views + pageMode in a Jupyter notebook

#351 keller-mark opened 2 months ago
0
Plugin class

#350 keller-mark closed 2 months ago
0
NickAkhmetov/Cap `numpy` under v2

#349 NickAkhmetov closed 3 months ago
1
Support writing plugin_esm using local file with anywidget FileContents

#348 keller-mark opened 4 months ago
0
Define a plugin class/dataclass to couple on_config_change and anywidget.invoke handlers with plugin_esm

#347 keller-mark closed 2 months ago
1
Adding Vitessce widgets to a visualization dashboard

#345 georgezakinih closed 5 months ago
1
Notebooks errors (list)

#344 thomcsmits opened 5 months ago
0
Notebooks environment.yml PackageNotFoundError for starlette==0.14.0

#343 thomcsmits opened 5 months ago
0
(chore): supported python versions

#342 ilan-gold closed 5 months ago
1
(chore): Clean up `AnnDataWrapper` API

#341 ilan-gold opened 5 months ago
2
Helper function to use adata.uns[obs_set_col + "_colors"] for initial obs set colors

#340 keller-mark opened 5 months ago
0
Setting colors for obsSets?

#339 srivarra opened 5 months ago
2
Create module for plugin JS

#337 keller-mark closed 4 months ago
0
Release v3.2.5

#336 NickAkhmetov closed 5 months ago
0
NickAkhmetov/Add `requestInit` param to `MultivecZarrWrapper`

#335 NickAkhmetov closed 5 months ago
0
Support using JSX for writing plugin views

#334 keller-mark closed 4 months ago
0
(feat): `SpatialData` wrapper

#333 ilan-gold opened 5 months ago
10
Bump version

#332 keller-mark closed 6 months ago
1
Support automatic instantiation of Wrapper objects

#331 keller-mark opened 6 months ago
2
pre-commits

#330 giovp opened 6 months ago
1
Use anywidget-based IPC for zarr gets which do not require serving data on localhost

#329 keller-mark closed 5 months ago
1
Versions of anndata, anywidget, JS package

#328 keller-mark closed 6 months ago
0
Bumping supported Anndata Version?

#327 srivarra closed 6 months ago
1
Update adata_to_multivec

#326 keller-mark closed 6 months ago
0
Support scope_prefix parameter in link_views_by_dict

#325 keller-mark closed 7 months ago
0
Support for plugins

#324 keller-mark closed 7 months ago
0
Proof of concept for spatial-query plugin view

#323 keller-mark closed 7 months ago
0
Add option for widget to communicate directly with Zarr store (no local HTTP server)

#322 keller-mark opened 7 months ago
2