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vitessce
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vitessce-python
Python API and Jupyter widget for Vitessce
https://python-docs.vitessce.io
MIT License
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Added support to accept split param in hconcat and vconcat functions
#392
tkakar
opened
3 days ago
0
Support a Vizarr-like API
#391
keller-mark
opened
5 days ago
0
Conda to uv
#390
keller-mark
opened
6 days ago
1
Question: How to show the obsSets on hover in spatial viewer of ome-tiff Image
#389
vdsukhov
opened
1 week ago
0
OME-Zarr output should write consolidated metadata
#388
carsten-jahn
opened
1 week ago
0
Example of rendering the image from the SpatialData blobs dataset
#387
keller-mark
opened
2 weeks ago
0
Add JsonWrapper class
#386
keller-mark
closed
3 weeks ago
0
`obsSegmentations.json` needs corresponding wrapper class in python
#385
keller-mark
closed
3 weeks ago
0
Move spatialdata dependency to dev
#384
keller-mark
closed
4 weeks ago
0
Switch to HIDIVE Lab name
#383
keller-mark
closed
4 weeks ago
0
Refactor wrappers.py
#382
keller-mark
opened
1 month ago
0
Changelog
#381
keller-mark
opened
1 month ago
0
Linting + Formatting
#380
ilan-gold
opened
1 month ago
0
Add python types
#379
ilan-gold
opened
1 month ago
0
SpatialDataWrapper
#378
keller-mark
closed
1 month ago
0
Use `uv` to manage dependencies in development environments, remove conda usage
#377
keller-mark
opened
1 month ago
0
Separate dev dependencies from actual dependencies
#376
flying-sheep
closed
1 month ago
4
Keller mark/spatial data2
#375
keller-mark
closed
1 month ago
0
SpatialData changes into original SpatialData branch
#374
keller-mark
closed
1 month ago
0
SpatialDataWrapper v2
#373
keller-mark
closed
1 month ago
0
Merge. Update spatialdatawrapper
#372
keller-mark
closed
1 month ago
0
Allow passing artifacts as data in addition to paths, urls, and zarr stores
#371
keller-mark
closed
1 month ago
0
Keller mark/more exports
#370
keller-mark
closed
1 month ago
0
Add minimal example notebook that demonstrates multi-obsType segmentations
#369
keller-mark
closed
1 month ago
0
Added utility functions to update and remove a view
#368
tkakar
closed
1 month ago
4
Fix invoke bug
#367
keller-mark
closed
2 months ago
0
`layout.to_dict()` throwing: `TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'`
#366
ivirshup
opened
2 months ago
0
Updated numpy to 2.0.2 and other packages to the latest
#364
tkakar
opened
2 months ago
3
Fix binder example
#363
keller-mark
closed
2 months ago
0
Enable `numpy` v2 Support/Unpin `numpy` v1
#362
NickAkhmetov
opened
2 months ago
0
Support for H5AD-based AnnData in AnnDataWrapper
#361
keller-mark
closed
2 months ago
0
Misc: Spatial-query, kerchunk, and OME helper functions
#360
keller-mark
closed
2 months ago
0
Command functions should be able to return an updated config
#359
keller-mark
opened
3 months ago
1
Vitessce python on remote jupyter servers do not work
#358
edwin5588
closed
2 months ago
3
Unit test for to_dict output following .add_object(AnnDataWrapper(...))
#357
keller-mark
closed
2 months ago
0
Warn if AnnDataWrapper options are empty as it would result in empty list for `vc['datasets']['files']`
#356
falexwolf
opened
3 months ago
4
page_mode and page_esm params
#355
keller-mark
opened
3 months ago
1
Plugin for SpatialQuery
#354
keller-mark
closed
3 months ago
0
Update fill_template.py
#353
keller-mark
closed
4 months ago
0
NickAkhmetov/Copy `requestInit` when using `from_dict`
#352
NickAkhmetov
closed
4 months ago
0
Ability to use comparative views + pageMode in a Jupyter notebook
#351
keller-mark
opened
4 months ago
0
Plugin class
#350
keller-mark
closed
4 months ago
0
NickAkhmetov/Cap `numpy` under v2
#349
NickAkhmetov
closed
5 months ago
1
Support writing plugin_esm using local file with anywidget FileContents
#348
keller-mark
opened
6 months ago
0
Define a plugin class/dataclass to couple on_config_change and anywidget.invoke handlers with plugin_esm
#347
keller-mark
closed
4 months ago
1
Adding Vitessce widgets to a visualization dashboard
#345
georgezakinih
closed
6 months ago
1
Notebooks errors (list)
#344
thomcsmits
opened
6 months ago
0
Notebooks environment.yml PackageNotFoundError for starlette==0.14.0
#343
thomcsmits
opened
6 months ago
0
(chore): supported python versions
#342
ilan-gold
closed
6 months ago
1
(chore): Clean up `AnnDataWrapper` API
#341
ilan-gold
opened
6 months ago
2
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