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Our ambition is for Carrot to support mapping the complete OMOP CDM, but this is a journey that will be delivered over time. We may need to update the Carrot CDM tool to support these as well.
This i…
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I'm looking to generate a cdm reference object from a databricks db (in a catalog=main and schema=omop) via odbc connector. It can connect ok but when I try to generate the reference using following c…
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In addition to GIS, we would like to incorporate terms needed to capture the MIMIC IV data in OMOP CDM format. Currently, these terms are built and handled by the [MIMIC -> OMOP ETL](https://github.co…
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[Achilles](https://github.com/OHDSI/Achilles)
This would be helpful when we have data in OMOP format.
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Establish a overall pipeline infrastructure for transforming and mapping FHIR resource data into appropriate OMOP CDM domains.
-generate code_map_walk to translate code/code system to OMOP concept id…
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The Clinical Trials Working Group proposes conventions for the OMOP CDM and Standardized Vocabularies **to capture clinical trial specific data**.
Our **use case** is the conversion of clinical tri…
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There are huge amounts of data being generated at hospitals every day. Up to 80% of this data is collected in an unstructured format and a large portion of it as free text. In order to extract value f…
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## CDM or THEMIS convention?
THEMIS
## Table or Field level?
Table
## Is this a general convention?
Applies to multiple fields
## Summary of issues
Below is taken from a real EHR data (P…
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Establish criteria for validating transformed data against OMOP CDM expectations.
Dependent on the pipeline, and the OMOP Spark dataset, that needs to conform to the OMOP schema
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Extract data from the example OMOP data to fill the [inpatient_microbiology](https://ramses-antibiotics.web.app/reference/inpatient_microbiology.html) table from the validate article. This is a split …