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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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Hi there,
I am using example bladder data to test and get going with 20/20+
I've data folder that has
```
$ ls data/
snvboxGenes.bed snvboxGenes.fa snvboxGenes.fa.fai
```
I run it as:
…
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#### What data file(s) does this issue pertain to?
`fusion-annoFuse.tsv.gz`
#### What release are you using?
v13-v15
#### Put your question or report your issue here.
Per the comment …
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`chr14 102499943 Minda_41 N . PASS SVLEN=262850;SVTYPE=DUP;SUPP_VEC=PB_severus_DUP2123,PB_r_97,ONT_r_81,ILL_MantaDUP:TANDEM:2:71784:71785:0:0:0,PB_ID_58650_2,ILL_225272706:2,ILL_gridss229bf_3708h,PB_…
jzook updated
1 month ago
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Hi Daniel,
i have noticed the same issue in version 1.33 for IGH@ locus and MYC.
Could you please have a look at it? Thank you.
### IGH@
chr14:105,556,000-106,883,700 (hg38 location)
FusionCatc…
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A user in community reported:
> We observed that many of the [papers tagged with gonorrhea](https://platform.opentargets.org/disease/DOID_7551) are actually about gastric cancer and never mention t…
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Dear AmpliconArchitect Team,
I would like to ask you few questions regarding the samples you used in the manuscript.
I used same WGS data from BioProject (accession number: PRJNA437014, only KT sa…
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I got error below.
Can you help me out?
Thanks.
```
python `which 2020plus.py` features -s output_bladder/simulated_summary/chasm_sim_summary2.txt --tsg-test output_bladder/simulated_sum…
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Thanks for you kindly help on the last question.
Restarting the code with --cores = 20 ,
$ snakemake -s Snakefile pretrained_predict -p --cores 20 \
--config mutations="/home/kjf/2020plus-1…