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Hi,
I am just curious is it possible to get the embedding of proteins and relations in https://www.zjukg.org/project/ProteinKG25/ separately using huggingface ontoprotein model ( https://huggingfa…
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Hey!
I'm trying to reproduced your results of the stability task with the KeAP model.
I trained the model on 4 GPUs with 300K steps total using your `run_pretrain.sh` scripts and I succeeded to repr…
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Hi is it possible to use https://huggingface.co/zjunlp/OntoProtein model to get the embedding of a protein sequence?
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Hi,
I am really interested in your work on OntoProtein . Is your code run on Google Colab? It would be helpful if you have google Colab tutorials to run your code.
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Hi there,
Thanks for providing the nice codebase. I'm trying to reproduce the results for downstream tasks, and I have the following questions.
- I'm wondering if the scripts under this [folder]…
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Hello, researchers.
I have a question about your pre-train datasets, when I checked your lists of pre-train datasets, I found only one dataset named relation2id.txt that is related to relations. An…
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Hi,
Thanks for open-sourcing this really cool model.
I'm trying to play around with pretraining it myself, but I run into this ImportError when I run the `run_pretrain.sh` script. I would great…
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您好，我想使用ontoProtein计算蛋白质的embedding，我在https://huggingface.co/zjukg/OntoProtein/tree/main
上下载了模型保存在本地，但是不同蛋白计算的embedding是一样的，请问这样正常吗？
- 下载文件到本地
包括```config.json pytorch_model.bin tokenizer_config.…
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Hello,
I have been looking at this repo for the last couple of days.
I'm interested in graph knowledge generation from the go features.
How did you manage to create the graph?
Is there any snip…
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Hello Researchers,
I am finding the bugs in installing the deepspeed of version=0.5.1. I have already installed python 3.8.13, pytorch=1.12.0 with torch vision=0.13.0, torch audio=0.12.0, and cuda…