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zjunlp
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OntoProtein
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
MIT License
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Question: Is it possible get the embedding of the relations and entities separately using Ontoprotein ?
#33
anonimoustt
opened
1 month ago
2
Important relation for the protein sequence
#32
anonimoustt
closed
4 months ago
3
Question: What is the evaluation metric for protein function classification?
#31
boram915
closed
4 months ago
2
Generating Embedding of Protein Sequence
#30
anonimoustt
closed
4 months ago
11
Running Code in Google Colab
#29
anonimoustt
closed
4 months ago
14
Inconsistent data statistics between the downloaded dataset and the reported statistics
#28
acharkq
closed
12 months ago
2
Go-Go relations are the same as Protein-Go relations?
#27
xinghao302001
closed
1 year ago
5
Exploding KE loss when training a new `protein-go` set
#26
jasperhyp
closed
1 year ago
1
Rationale for choosing this loss function
#25
jasperhyp
closed
1 year ago
2
Question about computing resource and batch size
#24
jasperhyp
closed
1 year ago
4
What is the `OntoModel` referenced in `run_pretrain.sh`
#23
tomcobley
closed
1 year ago
1
ImportError in deepspeed.py
#22
tomcobley
closed
1 year ago
2
[Confirmation] Optimal Hyperparameters and Reproducibility
#21
chao1224
closed
1 year ago
19
Trainer problem for pre-training
#20
nihaowxh
closed
1 year ago
2
Graph knowledge creation
#19
Amels404
closed
1 year ago
1
关于GO prediction的表现
#18
jasperhyp
closed
1 year ago
1
请问是否有和ESM-1b的benchmark结果
#17
jasperhyp
closed
1 year ago
1
关于GO的embedding
#16
liutong19991016
closed
1 year ago
1
the problem of biopython version?
#15
nihaowxh
closed
1 year ago
1
ontoProtein pretrained model
#14
wenyuhaokikika
closed
1 year ago
4
goa_uniprot_all.gaf和goa_uniprot_all.gat有什么不同?
#13
xinghao302001
closed
1 year ago
1
Issue in creating an environment for OntoProtein pretraining
#12
amalislam675
closed
1 year ago
5
run_pretrain.sh 报错
#11
Seyfried97
closed
1 year ago
4
预训练数据缺失问题
#10
Seyfried97
closed
2 years ago
2
Computational Resources and Time
#9
sa5r
closed
2 years ago
4
run_contact.sh error
#8
sa5r
closed
2 years ago
7
No such file or directory 'protein_go_train_triplet_filtered.txt'
#7
sa5r
closed
2 years ago
1
Cannot run the code without GPU
#6
sa5r
closed
2 years ago
1
goatools包问题
#5
lonetravelwolf
closed
2 years ago
7
数据文件
#4
lonetravelwolf
closed
2 years ago
2
No module named 'transformers.deepspeed'
#3
yuzhiguo07
closed
2 years ago
2
Backward Error during Pre-training
#2
chang-github-00
closed
2 years ago
1
merge
#1
Alexzhuan
closed
2 years ago
0