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The current implementation of stoichiometric consistency
https://github.com/opencobra/memote/blob/master/src/memote/support/consistency.py#L66
provides a substantial under-estimate of the stoichiome…
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The Uniform Sampling PDF tutorial is missing
GitHub Directory: https://github.com/opencobra/COBRA.tutorials/tree/0d5becf7171844e53d3d43437035917a2bd9cc61/analysis/uniformSampling
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* link to support ticket: [#2023032160001371](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=114796)
* website: https://opencobra.github.io/cobratoolbox
* installation docs:…
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Even though a memote docker image is tagged with version 0.13.0, it still contains a memote version 0.12.0:
```
docker run -it --entrypoint="/bin/bash" opencobra/memote:0.13.0
memote@ca4dfe75197d…
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The SBML models for plant species provided on the website contain duplicated IDs which makes them fail SBML validation.
This is a redirect from: https://github.com/opencobra/cobrapy/issues/1235 whi…
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Hello,
My name is Farid Zare and I am one of the maintainers of the COBRA toolbox : https://github.com/opencobra/cobratoolbox
We are happy to use MatGPT as a submodule in the COBRA toolbox, however…
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*Please include a short description of problem here*
I'm trying to figure out how to correctly load an excel file into and cobra model, so I checked the documentation here:
https://opencobra.github…
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Based on the MEMOTE function https://github.com/opencobra/memote/blob/f67e24bebe5b27b2313328f57226589f131cbb6c/src/memote/support/biomass.py#L160
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Just found that a cobrapy model defines the property `boundaries` whereas the pathway predictor expects `exchanges`. We are thinking about implementing further methods/properties here (https://github.…
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_From @zakandrewking on June 28, 2017 22:4_
Hi All:
I hope this is not a rehash of a previous conversation, but I could not find it, so here we go :)
Can we support non-integer charges in SBML …