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git-bob think about how to update the code in this repository to make use of napari's yml plugin definition. You find the documentation for this file format under the headline "npe2 contributions" her…
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Currently, there is no built-in support in Python's image processing libraries, such as OpenCV or scikit-image, to directly apply Otsu's thresholding algorithm.
I would like to request the addition …
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In other tools like Amira or DragonFly you can use 3D brush. We use this a lot in combination with otsu thresholding (https://github.com/scalableminds/webknossos/issues/7626). As far as I can see thi…
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Hi,
I am wondering if it is possible to do otsu's thresholding in pyvips? your help is much appreciated.
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Quick and dirty testing of decreasing ROIs for Otsu thresholding:
Sample 1 (High Signal to noise ratio, other cells close by)
 of our test cases, we consider an image generated with np.asarray([...]) to be our representation of an image. However, this generates numpy arrays of 64-bit precision.
As I…
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I would like to segment the nuclei in this image, e.g. using Voronoi-Otsu-Labeling.
## Image Upload
📎 **Drag & drop your microscopy image here…
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### Actual behavior
`gil::threshold_truncate()` and `gil::threshold_binary()` from gil/image_processing/truncate.hpp employ a hard-coded value of 0 for the channel minimum value and a value of `std::…