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Hello,
Much appreciated for your excellent work.
I try to run your code in my project with pangenome command.
I met a error as following:
Starting ====== 2020-02-27 12:40:48 ======
Traceback…
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I have installed it as mentioned in the given link https://github.com/neherlab/pan-genome-analysis/blob/master/README.md
step 1
Installed:- git clone https://github.com/neherlab/pan-genome-analys…
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Hello, thanks for sharing your code . I am very amazed by your work !
And I want to know where is this perl file .
```
/path/to/your/local/RepeatModeler-master/02_Ltr_and_classfier.pl
```
In my R…
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Dear all,
I have been having the following issue when installing panX. I followed the steps as in the site and used miniconda as indicated.
`Traceback (most recent call last):
File "./panX.py…
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(panX) anna@Anna-PC:~/work/pan-genome-analysis$ sudo sh run-TestSet.sh
Traceback (most recent call last):
File "./panX.py", line 6, in
from pangenome_computation import pangenome
File "/h…
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Hello
I am teaching myself how to run panX using TestSet. Here is the command I run exactly following the instructions.
./panX.py -fn data/TestSet/ -sl TestSet -t 32 > TestSet.log 2> TestSet.err
…
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## Short description of the problem
Anvi'o told me that my internal genomes all have the same hash and won't accept the flag it suggested to use to overcome that.
## anvi'o version
Anvi'o ...…
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Hello,
I ran the test data in the login node of HPC cluster:
```
nextflow run /public/home/zyqi/pan-TE-analysis/GraffiTE/GraffiTE/main.nf \
--assemblies assemblies.csv \
--TE_library huma…
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Hello everyone,
I am trying to run pan-genome analysis on 32 AOA species using the full genebanks I obtained from the NCBI and this code
./panX.py -fn data/genebanks -sl pratice -t 6
Howeve…
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So I know this is not the GitHub repository for the pan-genome-visualization package but I am super lost regarding how to make the visualization work.
What exactly are the arguments to be used for…