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Hi Wenfeng,
May I kindly ask if pGlyco3 could generate a peptide decoy itself, or a fasta file with decoy is required.
Thanks a lot.
Cheers,
Xindong
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Hello
I've encountered a similar issue after running pyssw.py. May I ask how you managed to resolve it?
_Originally posted by @a30221274 in https://github.com/twopin/CAMP/issues/27…
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Hey Michael,
For a current project we are working on, we are trying to use Sage with HLA peptides, specifically from the [thunderPASEF method](https://www.nature.com/articles/s41467-024-46380-y). W…
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Hi, I want to build a protein-ligand system where the ligand has more than 150 atoms.
Here is my script:
```
def read protein(protein_file):
protein = pdbfile.PDBFile(protein_file)
retu…
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Is that possible to support denovo peptide sequencing using tool like Casanovo in koina?
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I installed localcolabfold and copied HighFold git repo into my localcolabfold.
So that my localcolabfold git repo looks as
![Screenshot 2024-06-25 at 5 29 04 PM](https://github.com/hongliangduan/…
kimdn updated
2 weeks ago
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Hi, thank you for developing such an excellent software.
### pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?
#### Description
I have successfully run pVACse…
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Hi Bo,
I was using the standalone tool to identify/validate a novel peptide. How do I know the abundance of that peptide in different samples?
best,
Emily
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Would it make sense to utilise PoET for binding affinity prediction (ic50 score) of short peptide sequences (8-16 amino acids)? If yes, do you have any suggestions/comments on how to do it? Is it poss…
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