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Apparently REVIGO has changed format of the file that is obtained by pressing Export results to text table (CSV) in the web interface. Colum `representative` in revigo.csv file now lists GO ids inste…
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Hi @PatrickRWright @JensGeorg
CopraRNA checks for duplicated CDS within the all.fas file:
https://github.com/PatrickRWright/CopraRNA/blob/fdbca79d413b550bf5da62e0cd58fcc8f88c3da6/coprarna_aux/h…
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To complete:
GO:0032492 detection of molecule of oomycetes origin -> no annotations
GO:0032491 detection of molecule of fungal origin -> 7 annotations
GO:0032490 detection of molecule of bacteri…
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We found the PTI signalling term yesterday, hooray!
so when this is done:
https://github.com/geneontology/go-ontology/issues/18033
please add synonyms to
GO:0002221 pattern recognition rece…
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Problem: Chitin simpleEntity is not showing the full xrefs for the polymer (R-ALL-9611192).
Possible cause: Appear to be missing some external reference data, or the code to display it.
Pathway …
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- [x] GO:0103040 aldose sugar dehydrogenase activity EC:1.1.5.- >> replaced EC def xref by MetaCyc, add PMID for e. Eoli paper since the UniProt entry P75804 has no EC or RHEA.
- [x] GO:0102910 dirig…
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I would like to see “cellular response to bacterium” added to GO under the parent term “response to bacterium” (GO:0009617). The definition could be something like “Any process that results in a chan…
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GO:1902815 | N,N'-diacetylchitobiose import
GO:0015763 | N-acetylgalactosamine transport
GO:0015764 | N-acetylglucosamine transport
GO:2001143 | N-methylnicotinate transport
GO:0043132 | NAD tra…
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Looking for literature to identify important features of minicells and every information we'd find interesting (e.g biosafety, separation....)
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Hello Laurence, I am working with Claire Lehenaff on prophages, bacterial diversity and interactions in beverages fermentation context. We would try to investigate social genes in one of our specific …