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Dear Jeremy Gauthier,
We would like to use your popHyRAD.sh script for the analysis of our HyRAD data in the context of population genetics. However, we were unable to find the Perl script referenc…
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## Overview
There has been some interest in using genotypes called by polyRAD for population genetics analysis. Two pieces of software that have long supported polyploid genotypes are [Structure](…
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## Describe the issue
Hi,
We are currently using the G2P plugin based on the the global MAF in the locally downloaded gnomAD variants (`gnomADg_r3.1.1_GRCh38` and `gnomADe_r2.1.1_GRCh38`).
The…
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**Describe the bug**
I receive the error "Error while converting allele labels." in Population Genetics analyses while there is no such a problem in the Data analysis
**To Reproduce**
I can send/…
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Run 50 times `test_rizza`
5 times failed - test_positive_nested_reach_goal
2 times failed - test_positive_organism
```
______________________________ test_positive_nested_reach_goal ____________…
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I have these error messages for the hello world example.
```
Traceback (most recent call last):
File "/genetics-master/hello_world.py", line 42, in
best, best_score, average_score = dna_…
unnir updated
7 years ago
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Hey!
I having been using ANGSD for a population genetics study and it has been super great. I am creating a covariance matrix using doCov 1. The output is awesome and splits all of my populations r…
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Hi! I've come across a LD reference panel for AFR. But I need an appropriate SNP list for --merge-alleles. Does anyone know how to generate something suitable? Thank you!
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Currently when learning an MRsort model, a population of intermediate models is trained in parallel. After each training iteration, the best half of this population is kept, and the worst half is rein…
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**Authors:** Frédéric Guillaume, Olivier Cotto, Max Schmid, Jobran Chebib
**Abstract:** Modelling eco-evolutionary dynamics is challenging yet necessary to predict the demographic, phenotypic and…