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Hi,
I am encountering an issue:
Initially, when I ran the following code:
```
engep_predict
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While using Bakta, I realized that one of the known genes was not predicted. However, both Prokka and PGAP accurately predicted the gene. I tried using the -region option for this. Although Prokka's g…
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I have used identical RNA-seq data and protein sequences as inputs for the BRAKER to predict gene models for eight different varieties of the same species.
However, the number of gene models produce…
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I used to use scanpy python package for down-stream analysis.
I wonder how the predicted gene expressions can be analyzed in Anndata (Scanpy).
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After following the new installation guide and a number of hours in dependency hell, I got the package installed!!! Next, I converted my feature names in my seurat object to human as adt_predict does …
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Hi Jon,
I think you mentioned MetaEuk (https://github.com/soedinglab/metaeuk) to me at some point (as a comment in a failed research application). I've experimented a bit with it after that, and rece…
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Hello, I am new to gene prediction. As part of my research I have to predict the number of genes on some of my scaffolds. For one of my scaffolds (scaffold 10) its size is sufficient for Braker3 to ru…
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Hi,
I am using the calculated data from STAR to infer the cancer type using TULIP.
There are many genes without expression value, and I encountered some mistake after running the command, which …
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Hi, I really like your approach for modelling ordinal data and am trying it on my data. I have gene expression data and ordinal response data as well as categorical unpenalized factors. I have split m…
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Hello, first of all, thank you very much for your urgent feedback on my problem. But now, I have had a new problem.
when I run the function:
res.ici 1
此外: 警告信息:
In randomForest.default(x, y, mtr…