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could you provide the list of proteins that have zinc-binding sites based on UniProt?
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**Appreciate your outstanding work!**
I'm trying to dock a ligand composed of multiple monomers with my target protein. I set **Molecule Type** to '**ligand**' and **Copies** to 10, but the result …
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Hey PPanGGOLiN-Team,
I get the below when running `ppanggolin all` version 2.1.2. I want to make the switch from version 2.0.5, where analysis of the same input data works fine.
```
Traceback (…
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I am running AToM for ABFE for my systems. I adapted the control script from the tutorial and I am trying it on different ligands (more than 20 heavy atoms) bound to the same protein. For some of them…
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Hi,
I was wondering if it was possible to select a specific binding site with this software or if it is limited to whole protein docking. Thanks for your insight.
Cheers,
Tony
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0097159 organic cyclic compound binding
Definition
Binding to an organic cyclic compound, any molecular entity that…
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This replaces #29098
The following BPs represent MFs:
GO:0015680 protein maturation by copper ion transfer
GO:0097428 protein maturation by iron-sulfur cluster transfer
GO:0110147 protein mat…
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Hi
my name is jong hui hong
while I'm trying to train 3d CNN with my data, I got problem with
grid box size because my ligand was too big.
I know that the size of grid box which encompass
pro…
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Hi,
I'm working on implementing buffered force mixing (https://pubs.acs.org/doi/10.1021/jp405974b) in openMM, where the use case would be having an ML potential compute forces on a subset of the sy…
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I noticed that there are some other SO term annotated that have residues. Should any of these feature be included in the feature viewer? (Show details to see the residues)
- https://www.pombase…