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### Title
Proteomics Identification Ontology
### Short Description
The Proteomics Identification Ontology (PRIDE ontology) provides a model for describing, sharing and integrating of proteom…
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Hi,
Could the protein abundance values shown in the ‘Results’ tab for DDA (Data Dependent Analysis) proteomics baseline experiments include **ppb** (parts per billion) as the unit displayed next to…
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### What are you missing?
I am currently missing project/experiment examples pertaining to each domain
### Why do you need a solution?
There are few properties that differ in every domain. Having e…
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## Aim of the project
This project aims to have full single-cell transcriptomics and tissue proteome expression profiles across different species. These are the possible biological questions:
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Defect Description :
In the Overview page of An Overview of Virtual Proteomics Laboratory experiment , when we click on the Back to Experiments link , it is redirecting to the Sensors Modeling and Sim…
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Hello，
I am currently conducting single-cell proteomics experiments because our sample signals are much weaker compared to conventional DIA. I was wondering if DIA-NN has a similar way to adjust si…
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Is there any reason to restrict the scope of this project to "neuroscience" ? Couldn't we think about life science in general?
Especially when one consider that neuroscientists sometimes also do me…
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First copy [this file](https://github.com/PNNL-CompBio/p3/blob/main/functional/calculate-functional-enrichment.Rmd) to this repo. Then we can run the three tests on the protein data (syn25706561) and …
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# Abstract
Cytoscape is an open-source software to visualize and analyze biological networks. Developers can add new features to Cytoscape by developing their own Java-based apps by utilizing the C…
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My personal favorite feature of MS-GF+ is that the program allows one to use the results from a search to re-train the scoring parameters for your specific type of peptides. This feature is especiall…