-
We need to develop a robust and scalable data ingest/ETL (Extract, Transform, Load) pipeline to facilitate the reading of eQTL (expression Quantitative Trait Loci) data from FTP sources, indexing it i…
-
**For term:** analysisType
**Proposed value:** histone acetylation quantitative trait loci detection
- Definition: (can't find an ontology source, maybe a paper? abbreviated haQTL)
- Source:
…
-
From Jared @Jared Nedzel :
Folks, I’m working on the GTEx C2M2 submission and have some followup ontology questions from our meeting last week.
First, I wanted to confirm how we deal with compress…
-
http://doi.org/10.1101/069096 (also http://biorxiv.org/content/early/2016/08/11/069096 because the DOI isn't working for me)
**At a glance:** Uses a pretrained DeepSEA model (#13) to filter and group…
-
Hi all, it also seems there is a problem with the estimation of `VaW`. for a purely additive trait with no environmental variance, I expect `VaW=VgW=VpW`. In test simulations, I find `VaW>VgW=VpW`. I…
jgx65 updated
4 years ago
-
Dear authors, thanks for present a wonderful jobs for lettuce and the github code is very clear in details. Here is my question, did your study use the genetic map to impute the genotype when perform…
-
We noticed that some references didn't format well and that it always happened when there was a consortium in the author list. Also, the consortium name was missing.
There is always the solution o…
-
This ticket keeps track of existing eQTL fine mapping methods -- please use new comment for additional references so that I can be notified to add here and to my mendeley:
1. Davis, Joe R., et al.…
-
## Overview
We need to update the function that mines a description from PEPs inside pephub for subsequent embedding and insertion into Qdrant. Currently, the pipeline looks inside each PEP and attem…
-
Hi there,
When I try to compute Fst using GEAR, I found there is no RAF_SE columns in my GWAS summary statistics and in 1KG reference panel frq.file.
How can I get RAF_SE columns? Should I sample t…