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Hi,
I was testing the pipeline on some of my own data and I obtained no results (without errors) despite the fact that I know that there is some resistance genes in these data and looking at the ba…
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While running following command
nextflow run main_AMR++.nf -profile conda
N E X T F L O W ~ version 24.04.3
Launching `main_AMR++.nf` [elegant_gauss] DSL2 - revision: f6bfe39b99
A M R …
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**Describe the bug**
I believe there may be a format incompatibility with RGI bwt output (--include_wildcards). It looks like when multiple reference gene lengths are identified, it throws off pars…
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Hi,
Is it possible to analyze multiple files simultaneously with AMR++? I have over 80 samples, I requested 30 CPUs per task and 18 GB of memory per CPU. After 6 days of processing, I’ve found that…
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Dear Developer,
Firstly, thank you for this fantastic R package. I am working with low microbial biomass samples from the nasopharynx. We are using whole metagenomic sequencing data to characterize…
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Dear Sir:
I followed setup of amrplusplus/docs/installation.md and ran a simple test.
But I got the empty output files in RunRarefaction and RunResistome folders .
How can I get the c…
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Hello,
I have successfully ran the singularity image of the tool (argoapv2.5.sif) and afterwards I uploaded the outputs in the galaxy server (https://smile.hku.hk/SARGs/).
However, when I try t…
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Hi, I keep getting the above error:
`ERROR: Could not find .aligned.fa/.vcf in PC0086b-S0390
make: *** [Makefile:108: core.aln] Error 2
make: *** Waiting for unfinished jobs....
make: Leaving dir…
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Hi,
Hopefully this is not a known bug, but I couldn't find any issues mentioning it...
I deleted isolates from the sample.tab file and ran make again in the nullarbor project. The deleted isolates…