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Hi,
First, apologies if this is not the best place to ask this question. I'm doing gene annotation for a non-model rodent, and I have tried several approaches:
1. BRAKER2: with a large protein dat…
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Thank you very much for your help, thank you
I want to know if this tool can handle RNA-seq data, or can it only handle single-cell data?
I wish you good luck with your research
l1y1y updated
3 months ago
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# [BI] RNA-seq data processing using nf-core pipeline | Keun Hong
Link: nf-core rnaseq pipeline
[https://keun-hong.github.io/bioinformatics/rna-seq-nf-core/](https://keun-hong.github.io/bioinformati…
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Hi all,
I am really interesting in using your R package to deconvulte some of my bulk RNA-seq data. I was just trying to use the example data which is loaded with the package but I have already encou…
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[ ] Add a slide on publicly available data, how to access it and how to clean it up (maybe share a script for clean up?)
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Hi, thank you so much for the great tool.
I'm trying to apply longshot on long-read RNA-seq data (Iso-seq data from PacBio HiFi reads).
I ran the pipeline with default options and got ~30% reads …
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I want to use `kb` to obtain nascent/mature counts for 10x 5P RNA-seq data. This technology is not explicitly listed in `kb --list`. I might be wrong, but I think the bc/umi structure is similar to th…
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When creating gitignore.user, I forgot to pay attention to the individual module gitignore files... which means we are not ignoring data files. That's bad. We want to ignore those, but we probably don…
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Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
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Hello!
Is it possible to use SATC with RNA-seq data?