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Gaius-Augustus
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GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
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The number of genes that exceed normal
#53
fishman311
opened
1 week ago
0
updating Dockerfile
#52
KatharinaHoff
closed
2 weeks ago
0
Transcript ID is not unique
#51
xo2003
opened
1 month ago
2
Error regarding pygustus in singularity run: "No space left on device"
#50
maxnest
closed
1 month ago
2
Key ERROR in [filter_gtf_by_txid.err]
#49
Marison-1
opened
3 months ago
2
Is this correct output?
#48
y-yoshioka1109
opened
3 months ago
3
Intall
#47
zhangyixing3
closed
4 months ago
2
Error regarding pygustus in singularity run
#46
stat-lab
closed
4 months ago
4
failed to execute: /usr/bin//etraining
#45
jyw-atgithub
closed
5 months ago
2
error: exited due to an error in command: grep intron
#44
qussai96
closed
5 months ago
3
GALBA is not compatible with GFF and FAA(FASTA) from NCBI Refseq
#43
jyw-atgithub
closed
5 months ago
1
gbFilterEtraining.stderr error
#42
gushiro
closed
5 months ago
4
pygustus_hints.err
#41
linshengnan09
closed
5 months ago
4
A gene that has a CDS with a different orientation in GALBA results
#40
suyeonwy
closed
6 months ago
7
Update README.md
#39
KatharinaHoff
closed
10 months ago
0
In transcript g86.t1 two UTR/CDS features are overlapping. Not allowed by definition. at ~/software/Augustus/scripts/gtf2gff.pl line 182, <STDIN> line 759036.
#38
wangjie07070910
opened
10 months ago
8
galba.gtf not created
#37
kullrich
closed
8 months ago
3
Change working directory?
#36
kushalsuryamohan
closed
1 year ago
0
warning: Coverage appears to be high, --ignoreCoverage flag will be ignored
#35
alexvasilikop
closed
6 months ago
4
Long runtime for 3 Gb genome
#34
ASLeonard
closed
1 year ago
5
gbFilterEtraining error
#33
marcelauliano
closed
10 months ago
2
Pygustus type error
#32
SamCT
closed
10 months ago
6
failed to execute miniprothint.py
#31
COMInterop
closed
10 months ago
4
Segmentation fault
#30
aabaricalla
closed
1 year ago
6
Training file does not contain any training genes
#29
mabh5
closed
1 year ago
5
Protein.fa files
#28
zhoudreames
closed
1 year ago
2
script to produce alternative transcripts list for omark analysis fro…
#27
KatharinaHoff
closed
1 year ago
0
fixing alternatives from evidence prediction
#26
KatharinaHoff
closed
1 year ago
0
Run miniprot only once
#25
tomasbruna
closed
1 year ago
6
Merge pull request #23 from Gaius-Augustus/iterative_training
#24
KatharinaHoff
closed
1 year ago
0
Iterative training
#23
KatharinaHoff
closed
1 year ago
0
Use Existing not working
#22
aabaricalla
closed
1 year ago
2
Updating from main
#21
KatharinaHoff
closed
1 year ago
0
Error during miniprothint stage
#20
ASLeonard
closed
1 year ago
5
aa2nonred.pl still introduces randomness in training success
#19
KatharinaHoff
opened
1 year ago
0
updating version number for release
#18
KatharinaHoff
closed
1 year ago
0
Updating accuracy documentation
#17
KatharinaHoff
closed
1 year ago
0
Preparing GALBA container update
#16
KatharinaHoff
closed
1 year ago
0
Iterative training
#15
KatharinaHoff
closed
1 year ago
0
first miniprothint integration
#14
KatharinaHoff
closed
1 year ago
0
enabling eval accuracy
#13
KatharinaHoff
closed
1 year ago
0
help mod now allows symlinks
#12
KatharinaHoff
closed
1 year ago
0
Pygustus in the Singularity
#11
Phismil
closed
1 year ago
8
pygustus error
#10
CongLiu37
closed
1 year ago
2
Updating large_input branch prior boundary score integration
#9
KatharinaHoff
closed
1 year ago
0
Run GALBA with external miniprot run
#8
CongLiu37
opened
1 year ago
5
Iterative training
#7
KatharinaHoff
closed
1 year ago
0
Large input
#6
KatharinaHoff
closed
1 year ago
0
Revert "Pygustus"
#5
KatharinaHoff
closed
1 year ago
0
Pygustus
#4
KatharinaHoff
closed
1 year ago
0
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