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https://cirrus-ci.com/task/6753775436169216?command=main#L1533
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https://github.com/viapath/snappydocker
NGSeasy reimplemented (with one of our collaborators David Brawand) with a the python ruffus pipeline manager. Might be something to look at.
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```
G. Lunter requests depth first execution of ruffus to remove the necessity of
all jobs completing for a task before jobs from a dependent, downstream task
are executed.
Will require extensive r…
-
```
G. Lunter requests depth first execution of ruffus to remove the necessity of
all jobs completing for a task before jobs from a dependent, downstream task
are executed.
Will require extensive r…
-
```
G. Lunter requests depth first execution of ruffus to remove the necessity of
all jobs completing for a task before jobs from a dependent, downstream task
are executed.
Will require extensive r…
-
Hello!
New object oriented syntax is awesome. I was wondering if we could get updates to the docs for working with the new pipeline syntax and the ruffus cmdline approach.
What I mean:
``` python
#…
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Hello ,
I was able to install version 2.8.4 ,but I am trying to install Ruffus 2.4.1 , which is a mandatory version in Kronos_pipeline , i get this error , task not found , i see the that task.py is …
-
```
G. Lunter requests depth first execution of ruffus to remove the necessity of
all jobs completing for a task before jobs from a dependent, downstream task
are executed.
Will require extensive r…
-
```
G. Lunter requests depth first execution of ruffus to remove the necessity of
all jobs completing for a task before jobs from a dependent, downstream task
are executed.
Will require extensive r…
-
```
Adding ability to use function calls to associate tasks with pipelines much as
this is done using decorators nowadays.
This adds flexibility and allows nested calls.
```
Original issue reported…