-
Here are some additional papers describing/developing/analysing Runge-Kutta-Nyström methods:
- [ ] [Dormand, J. R., and PJi Prince. "New Runge-Kutta algorithms for numerical simulation in dynamical a…
-
Just a list of schemes that we would like to be implemented into the library:
- [x] explicit schemes:
- [x] Adams-Bashforth schemes see [7]:
- [x] 1 step, namely the forward explicit Euler schem…
-
-
Flowline calculation is currently relatively slow. One part is related to necessary loading of relatively large netCDF files, the other relates to the calculation itself. The first - because easier - …
-
```
from roadrunner import RoadRunner
sbml_file = "AModel.sbml"
r = RoadRunner(sbml_file)
integrators = ('cvode', 'gillespie', 'rk4', 'rk45', 'euler')
data = {}
for integrator in integrators…
-
On the Yambo notes on [overleaf](https://www.overleaf.com/project/66a23dc37e8bf3627299a5b5) i wrote a detailled analysis of what I know of the numerical approaches to the solution of the real-time dyn…
-
iBioSim Version 2.9.5
Operating system: Windows 10
Bug reported by: acid@mail.usf.edu
Description:
I am using a Windows 10 desktop and was running through the tutorial though Runge-Kutta-Fehlberg …
-
Adaptive exponential integrate-and-fire neurons seem to have an irregular spiking threshold with a certain set of parameters and a relatively strong input current.
I am trying to port a spiking ne…
-
When one lets the `get_source()` function in step-52 return zero, then the solution is obviously zero because the initial and boundary conditions are zero. One can force the situation to be marginally…
-
Hey,
Thanks for the wonderful library. Do you have plans of putting in adaptive solvers of differential equations? Would that require considerable changes to the current framework?
Best,
Amar…