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### Description of feature
Make sure that no input are snapshot by nf-test:
As it will err if we change the path to the files:
- github: `/nf-core/test-datasets/modules/data/genomics/sarscov2/illum…
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In the last few months we have swapped the file paths used in tests from:
```nextflow
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
```
to direct paths like:
`…
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Hello again,
I think the ref argument in superpose is selecting the atom and not the frame/conformation to superpose the ensemble. So a code like this:
```python
#dados anteriores
data = '090…
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./SARSCOV2/gisaid/gisaid_cov2020_sequences_aligned_filter1_noDups_april20.fas
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cannot open file '../SARSCoV2_Sequencing/data/gisaid/downloaded_data/20201111/metadata_2020-11-11_07-27.tsv': No such file or directory
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I tried to run the package as documented in the codeToRun and got the following error when trying to run `prepareShinyData`
```
> execute(
+ connectionDetails = connectionDetails,
+ cdmD…
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I am applying strict QC to all glycosylation/phosphorylation/glycation site dataset files, and the filtered out rows are stored in logs/*_proteoform_*.global.log files, and also I have created a scrip…
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Hi,
I noticed that poreCov crashes when running pangolin via singularity and a reasonably modern nextflow version. It seems that recent updates in the path mounting defaults of nextflow broke the de…