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When a combinatorial design is saved to SBOL, only one of the various permutations are visible when the SBOL file is opened in SynBioHub. SBOL Designer has an option as to which of the combinatoric de…
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When uploading or enumerating an error 500 internal server error is reported. This can be resolved by running SBOL Canvas from an incognito browser, if that fails then reloading SBOL canvas in a new i…
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I tried converting something very minimal with the python native converter:
```
import sbol2
from sbol_utilities import conversion
doc2 = sbol2.Document()
comp = sbol2.ComponentDefinition()
…
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The CI script is currently configured to test SBOL utilities for Python versions 3.7, 3.8, 3.9, 3.10, 3.11 for the latest Ubuntu version. Currently - this is 24.04.
However, GitHub only supports P…
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It isn't clear how hierarchical designs are handled in terms of strand directionality. So if there is an engineered region in the top level that then has its orientation flipped to the lower strand, w…
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I'm not sure how to set the identities of owned objects while preserving the IDs from SBOL2. When I try to set the identity of a `Cut`, for example:
```python
import sbol2
from sbol_utilities imp…
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We need a page to talk about the planned SBOL Blog. We can add a coming soon text with a small blurb telling people what to expect. Here are a few ideas/examples:
We need to finalise a name for thi…
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I realised this during the COMBINE meeting while working on the converter, and we discussed over video conference with @jakebeal . The value of certain identifiers.org constants differ between SBOL2 a…