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Hello, I annotated with cat. There are three sequences classified into viruses, but no species. Then we can manually compare them with NR database by diamond or NCBI nt . Do you know why
`diamond …
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For https://github.com/PHI-base/curation/issues/180
Please add strain 'H11-20' for pathogen Aspergillus fumigatus.
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The following table lists all the genes in curation sessions that aren't used in any annotations. The table was generated by a script that searches the PHI-Canto JSON export. It's up to date as of 1 D…
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I've done a sample code with rust bio compared to a simple implementation in python and julia.
## The used code
### First the code in rust with rust bio:
```
use bio::{
alignment::{pairwise::…
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Curated by @MPiovesana
https://canto.phi-base.org/curs/18d9e451b097de27
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Hi,
thanks a lot for this amazing tool. I am a user of virtool, Virfind and V-pipe and I am planning to have VirAnnot. I can fairly say that I love using virtool. However, there is two improvements …
mfall updated
3 years ago
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GNRD is finding a correct taxon name, but grabbing a following word that it shouldn't. Words like "clade", "complex", and "genome" are very common
data package ID | name | error type | text string …
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Dear David,
I used total 21 fungal species to run orthofinder, using -M msa option. So I should be getting a rooted species tree with 21 species displayed, instead I am getting one extra named "NUL…
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Draft models for outgroup strains don't exist.
Outgroup:
> Arthrobotrys_oligospora
> Aspergillus_nidulans
> Botrytis_cinerea
> Coccidioides_immitis
> Fusarium_graminearum
> Neurospora_crassa
…
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I have a bibtex entry from [my bibtex repository](https://github.com/zkamvar/znk-bibliography) that looks like this:
```latex
@article{kamvar2018something,
title = {Something in the agar does n…