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```
org.apache.spark.SparkException: Job aborted due to stage failure: Task 15 in stage 2.0 failed 20 times, most recent failure: Lost task 15.19 in stage 2.0 (TID 189) (seqr-airflow2-37-v03-pi…
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Hi, I'm using magisk now on android 7 recently it stopped working with seqr I tried multiple things, hiding props and removing apps nothing seems to work, can you maybe take a look for what it checkes…
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See dcgenomics/seqr#19
Seqr should run a lot faster than blastx. Seqr is working, but doesn't take all the command-line options that blast does yet (and some aren't applicable, like `word_size`, beca…
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As part of recovering costs for external datasets, we need to store and determine some reporting mechanism for the different costs we accrue for processing and storing data (re @lgruen):
- CRAM sto…
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During the JointGenotyping jobs in the seqr_loader pipeline, there is a job that gathers all the outputs from the `GenotypeGVCFs` jobs and merges them into one. [Here](https://github.com/populationgen…
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1. Add a new enum for seqr data type,
2. Then, es-index typed analysis will also include a "seqr-data-type" attribute on the meta (as well as a `sequencing-type`)
Clarifying that:
* Seqr projects…
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**Is your feature request related to a problem? Please describe.**
I added a manual SV to a seqr project/family but made a mistake entering the genotypes for two of the family members. I don't see an…
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We are using [STAR-SEQR](https://github.com/ExpressionAnalysis/STAR-SEQR) for fusion detection and I am trying to visualize the data using chimeraviz. Is there a good way to input the STAR-SEQR's outp…
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As they are returned, evaluate other general quality metrics from GP and DSP, for things like contamination and coverage and any/other picard metrics. Will update this ticket as I learn more about wha…
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Placeholder ticket with some notes:
```
Seqr-Sample-QC
Sequencing metrics
if it's exome and external
Platform Level Computation
For exome samples
coverage stats, figure out which pl…