stianlagstad chimeraviz issues

stianlagstad / chimeraviz

chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

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issues

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Fusion transcript plot with protein domain annotations

#99 JReneWong closed 5 months ago
1
No coverage data for plot_fusion

#98 Aisha-D closed 7 months ago
2
Failed to create EnsDb

#97 taot2007 opened 1 year ago
1
Error during the execution of plot_fusion

#96 dplassard closed 1 year ago
5
Custom genomes

#95 Zhuxitong opened 1 year ago
2
2 question with chimeraviz

#94 yubau1112 closed 2 years ago
3
Dependency on deprecated ArgumentCheck CRAN package

#93 matdoering closed 2 years ago
1
How to input STAR-SEQR output?

#92 DadongZ opened 3 years ago
1
Use checkmate instead of ArgCheck

#91 stianlagstad closed 3 years ago
0
switch to checkmate

#90 nutterb closed 3 years ago
3
Failed to create reference fasta file

#89 ashishyeri closed 3 years ago
4
Fix protein domain plot

#88 stianlagstad closed 3 years ago
0
plot_fusion_transcript_with_protein_domain(): error plotting upstream domains

#87 ivanbelzen closed 3 years ago
2
Travis build fails

#86 stianlagstad opened 3 years ago
0
Support Fusion-Bloom

#85 stianlagstad opened 4 years ago
0
Fix incorrect upstream ideogram

#84 stianlagstad closed 4 years ago
1
Chromosome not labeled correctly?

#83 ahdee closed 4 years ago
4
How to make fusioncatcher data compatible to chimeraviz

#82 cetienn01 closed 4 years ago
4
Initial support for Aeron

#81 stianlagstad closed 4 years ago
2
Add chrM support in plot_circle. Ref #18

#80 stianlagstad closed 4 years ago
1
Add support for SQUID data

#79 stianlagstad closed 4 years ago
2
Create the report file at the right location

#78 stianlagstad closed 4 years ago
0
Added support for ChimPipe

#77 stianlagstad closed 4 years ago
1
Minor cleanup in plot_circle

#76 stianlagstad closed 4 years ago
1
coverage issue in plot_fusion_separate

#75 DanieleDallOlio closed 4 years ago
2
Support ChimPipe

#74 stianlagstad closed 4 years ago
1
Attempt to fix travis build

#73 stianlagstad closed 4 years ago
1
Why is it impossible to use plot_fusion_transcript_with_protein_domain without a BAM file?

#72 ziadbakouny18 closed 4 years ago
1
plot_fusion function not finding "SPFQ" or "CADM2" transcripts in an edb object that has them.

#71 ziadbakouny18 closed 4 years ago
2
Fix the check length condition

#70 stianlagstad closed 4 years ago
1
Fix if-tests that cause failures with R 3.6

#69 stianlagstad closed 4 years ago
1
Assignment to global environment

#68 Ax3man opened 5 years ago
1
Question: what are the red bands on the chromosome?

#67 ahdee closed 5 years ago
4
Trying examples in vignette

#66 BenoitFiset closed 4 years ago
6
Allow plot_fusion without coverage.

#65 stianlagstad closed 5 years ago
2
Allow plot_fusion without coverage.

#64 stianlagstad closed 5 years ago
1
Fix vignette warning

#63 stianlagstad closed 5 years ago
0
data.table warning in vignette

#62 stianlagstad closed 5 years ago
4
Plotting with no bam file?

#61 ahdee closed 5 years ago
8
Incorrect naming for reads in Ericscript

#60 matq007 closed 5 years ago
2
Coverage not plotted with plot_fusion()

#59 csijcs closed 4 years ago
7
Improve test coverage

#58 stianlagstad closed 5 years ago
5
Feature request: Ability to control y axis limits (ylim) for the gene partners separately

#57 stianlagstad opened 5 years ago
0
Include extra fields if available

#56 stianlagstad closed 4 years ago
2
Fix #52 in release 3.8. Thanks fmarois

#55 stianlagstad closed 5 years ago
1
Fix #52 in release. Thanks fmarois

#54 stianlagstad closed 5 years ago
3
Fix link width ordering.

#53 stianlagstad closed 5 years ago
2
plot_circle line width not assigned to right fusion

#52 fmarois closed 5 years ago
2
plotFusion or plotFusionTranscriptWithProteinDomain without providing bam file fails to plot

#51 fmarois closed 5 years ago
1
Fix ensembl id parsing in import_starfusion

#50 stianlagstad closed 5 years ago
0