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stianlagstad
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chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
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Fix ensembl id parsing in import_starfusion
#49
stianlagstad
closed
5 years ago
0
Oncofuse
#48
stianlagstad
closed
5 years ago
1
Request for support for importing other fusion calls
#47
MrsLaviniaG
closed
5 years ago
7
Plot_transcripts error with STAR but not SOAP imports.
#46
ahdee
closed
5 years ago
5
bigger font?
#45
ahdee
closed
6 years ago
1
Error: Invalid genome version given
#44
MoHallal
closed
6 years ago
2
current vignette has lots of warnings
#43
vjcitn
closed
5 years ago
3
Coverage not plotted with "plotFusionTranscript"
#42
JakobHofvander
closed
5 years ago
2
What do the link widths represent in the overview plot?
#41
komalsrathi
closed
6 years ago
2
Adds lintr test
#40
stianlagstad
closed
6 years ago
2
Adds lintr test
#39
stianlagstad
closed
6 years ago
1
Adds test for when there's no junc sequence
#38
stianlagstad
closed
6 years ago
1
Adds test for when there's no junc sequence
#37
stianlagstad
closed
6 years ago
1
This adds a code coverage badge to the readme.
#36
stianlagstad
closed
6 years ago
1
This adds a code coverage badge to the readme.
#35
stianlagstad
closed
6 years ago
1
This adds code coverage checks on Travis builds.
#34
stianlagstad
closed
6 years ago
1
This adds code coverage checks on Travis builds.
#33
stianlagstad
closed
6 years ago
1
Better document how to create a file with protein domain coordinates
#32
stianlagstad
opened
6 years ago
2
This gives an error when writeFusionReference is called and the fusio…
#31
stianlagstad
closed
6 years ago
0
This gives an error when writeFusionReference is called and the fusio…
#30
stianlagstad
closed
6 years ago
0
This adds instructions for how to develop chimeraviz using Docker
#29
stianlagstad
closed
6 years ago
0
Remove unnecesary parts from .travis.yml
#28
stianlagstad
closed
6 years ago
0
Remove unnecessary stuff from .travis.yml
#27
stianlagstad
closed
6 years ago
0
Setup builds with Travis
#26
stianlagstad
closed
6 years ago
0
Setup builds with Travis
#25
stianlagstad
closed
6 years ago
0
Empty reference when importing STAR-Fusion output
#24
komalsrathi
closed
4 years ago
10
Reading fusion seq
#23
plijnzaad
closed
5 years ago
2
Import fusion inspector
#22
plijnzaad
opened
6 years ago
0
Import fusion inspector support
#21
plijnzaad
opened
6 years ago
2
now also setting fusion@inframe ...
#20
plijnzaad
closed
4 years ago
1
Check fusion junction length
#19
plijnzaad
closed
4 years ago
1
Mitochondria
#18
plijnzaad
closed
4 years ago
1
plotFusionReads fails if junctionSequence is empty
#17
plijnzaad
closed
6 years ago
2
fusion@gene[AB]@ensemblId not filed in by importStarfusion
#16
plijnzaad
closed
6 years ago
2
Warning message: The following named parsers don't match the column names: J_FFPM, S_FFPM
#15
zhixue
closed
6 years ago
15
Visualization of chimeric transcript from Non-human organism
#14
wyzhangMPI
closed
6 years ago
11
plotFusionTranscriptWithProteinDomain function not found
#13
raunakms
closed
6 years ago
3
object 'alTrackHighlightB' not found
#12
OvoiDs
closed
6 years ago
1
linkWidth wouldn't work if only one fusion
#11
OvoiDs
closed
6 years ago
1
Coverage not showing with reduced transcripts in fusionPlot
#10
stianlagstad
closed
5 years ago
1
Investigate 5' and 3' marker error in fusionPlot
#9
stianlagstad
opened
6 years ago
1
Update plotCircle.R
#8
OvoiDs
closed
6 years ago
2
Graphics issue in plotFusion and plotFusionReads
#7
komalsrathi
closed
6 years ago
5
Error in data.frame(x1 = start(pairGaps) - 1, y1 = gy, x2 = end(pairGaps) +
#6
komalsrathi
closed
6 years ago
26
seqlevels(param) not in BAM header
#5
komalsrathi
closed
6 years ago
7
Column Header Issue with importStarfusion.R Function
#4
drmrgd
closed
6 years ago
6
heads-up for filter classes being removed from ensembldb
#3
jorainer
closed
7 years ago
8
Vignette levels of toc
#2
llrs
closed
7 years ago
1
Cobine the differnt fusion results
#1
KeyTals
closed
7 years ago
2
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