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stianlagstad
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chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
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Fusion transcript plot with protein domain annotations
#99
JReneWong
closed
7 months ago
1
No coverage data for plot_fusion
#98
Aisha-D
closed
8 months ago
2
Failed to create EnsDb
#97
taot2007
opened
1 year ago
1
Error during the execution of plot_fusion
#96
dplassard
closed
1 year ago
5
Custom genomes
#95
Zhuxitong
opened
1 year ago
2
2 question with chimeraviz
#94
yubau1112
closed
2 years ago
3
Dependency on deprecated ArgumentCheck CRAN package
#93
matdoering
closed
2 years ago
1
How to input STAR-SEQR output?
#92
DadongZ
opened
3 years ago
1
Use checkmate instead of ArgCheck
#91
stianlagstad
closed
3 years ago
0
switch to checkmate
#90
nutterb
closed
3 years ago
3
Failed to create reference fasta file
#89
ashishyeri
closed
3 years ago
4
Fix protein domain plot
#88
stianlagstad
closed
3 years ago
0
plot_fusion_transcript_with_protein_domain(): error plotting upstream domains
#87
ivanbelzen
closed
3 years ago
2
Travis build fails
#86
stianlagstad
opened
4 years ago
0
Support Fusion-Bloom
#85
stianlagstad
opened
4 years ago
0
Fix incorrect upstream ideogram
#84
stianlagstad
closed
4 years ago
1
Chromosome not labeled correctly?
#83
ahdee
closed
4 years ago
4
How to make fusioncatcher data compatible to chimeraviz
#82
cetienn01
closed
4 years ago
4
Initial support for Aeron
#81
stianlagstad
closed
4 years ago
2
Add chrM support in plot_circle. Ref #18
#80
stianlagstad
closed
4 years ago
1
Add support for SQUID data
#79
stianlagstad
closed
4 years ago
2
Create the report file at the right location
#78
stianlagstad
closed
4 years ago
0
Added support for ChimPipe
#77
stianlagstad
closed
4 years ago
1
Minor cleanup in plot_circle
#76
stianlagstad
closed
4 years ago
1
coverage issue in plot_fusion_separate
#75
DanieleDallOlio
closed
4 years ago
2
Support ChimPipe
#74
stianlagstad
closed
4 years ago
1
Attempt to fix travis build
#73
stianlagstad
closed
4 years ago
1
Why is it impossible to use plot_fusion_transcript_with_protein_domain without a BAM file?
#72
ziadbakouny18
closed
4 years ago
1
plot_fusion function not finding "SPFQ" or "CADM2" transcripts in an edb object that has them.
#71
ziadbakouny18
closed
4 years ago
2
Fix the check length condition
#70
stianlagstad
closed
4 years ago
1
Fix if-tests that cause failures with R 3.6
#69
stianlagstad
closed
4 years ago
1
Assignment to global environment
#68
Ax3man
opened
5 years ago
1
Question: what are the red bands on the chromosome?
#67
ahdee
closed
5 years ago
4
Trying examples in vignette
#66
BenoitFiset
closed
4 years ago
6
Allow plot_fusion without coverage.
#65
stianlagstad
closed
5 years ago
2
Allow plot_fusion without coverage.
#64
stianlagstad
closed
5 years ago
1
Fix vignette warning
#63
stianlagstad
closed
5 years ago
0
data.table warning in vignette
#62
stianlagstad
closed
5 years ago
4
Plotting with no bam file?
#61
ahdee
closed
5 years ago
8
Incorrect naming for reads in Ericscript
#60
matq007
closed
5 years ago
2
Coverage not plotted with plot_fusion()
#59
csijcs
closed
4 years ago
7
Improve test coverage
#58
stianlagstad
closed
5 years ago
5
Feature request: Ability to control y axis limits (ylim) for the gene partners separately
#57
stianlagstad
opened
5 years ago
0
Include extra fields if available
#56
stianlagstad
closed
4 years ago
2
Fix #52 in release 3.8. Thanks fmarois
#55
stianlagstad
closed
5 years ago
1
Fix #52 in release. Thanks fmarois
#54
stianlagstad
closed
5 years ago
3
Fix link width ordering.
#53
stianlagstad
closed
5 years ago
2
plot_circle line width not assigned to right fusion
#52
fmarois
closed
5 years ago
2
plotFusion or plotFusionTranscriptWithProteinDomain without providing bam file fails to plot
#51
fmarois
closed
5 years ago
1
Fix ensembl id parsing in import_starfusion
#50
stianlagstad
closed
5 years ago
0
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