-
I have been downloading the SIFTS dataset for two days now in order to calculate the contact matrix through multiple sequence alignment. How long does it usually take to download this dataset?
-
I'm new to Meshroom and i got stuck on the second node. I tried testing Meshroom with the Monstree dataset and it didn't work for me. Does anyone know why is says that there are no sifts after Feature…
-
Currently we are using the summary mapping files e.g. in PDBPfamMapper.
Sifts now supplies a nice rest interface: http://www.ebi.ac.uk/pdbe/api/doc/sifts.html, and should use it.
-
Proposed design:
ProteoFAV's main features:
1 - Reading/parsing formatted files to pandas DataFrames (e.g. mmCIF, PDB, SIFTS XML, DSSP files)
2 - Downloading data files on the fly (e.g. mmCIF, PD…
-
I found the error because Travis failed: https://travis-ci.org/diegozea/MIToS.jl/jobs/462647203
`@warn` is called here: https://github.com/diegozea/MIToS.jl/blob/master/src/SIFTS/ResidueMapping.jl#L2…
-
Hi. I am getting a ResourceError with uniprot when trying to run evcouplings_dbupdate:
/home/mario/miniconda3/envs/pydca/lib/python3.6/site-packages/click/core.py:754: DtypeWarning: Columns (6) hav…
-
From #96 .
Re-assigning @b-schubert and @aggreen , and putting up for the next release. If this doesn't seem like a prio, then put it up for 0.0.6
-
When submitting a complex job via evcouplings.org, I run into the following `.failed`:
```
Traceback (most recent call last):
File "/n/groups/marks/software/anaconda_o2/envs/evcouplings_backend…
-
Hi all,
stumbled upon this paper describing the mapping of PDB residue id's to the ones in the sequence deposited in Uniprot:
- Choudhary, P.; Anyango, S.; Berrisford, J.; Varadi, M.; Tolchard, …
-
Is there any support for residue mapping from a sequence of a isoform on UniProt to a PDB structure?
I currently need it for a feature where I need to color parts of structure based on a feature wh…