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debbiemarkslab
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EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
http://evcouplings.org
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v0.2.0
#315
thomashopf
closed
5 days ago
0
build_test_and_push github action fails, preventing new release
#314
thomashopf
opened
5 days ago
5
Update build_test_and_push.yml
#313
thomashopf
closed
5 days ago
0
ensure chain IDs are always str
#312
thomashopf
closed
6 days ago
0
v0.2
#311
thomashopf
closed
6 days ago
0
Release v0.2 version of EVCouplings
#310
rmaguire31
opened
1 month ago
2
install problem
#309
ChristophKnapp
opened
1 month ago
3
fix KeyError due to absence of secondary structure sections
#308
thomashopf
closed
2 months ago
0
PDB no longer provides MMTF files
#307
pedrobfer
opened
3 months ago
5
UserWarning and RuntimeWarning when running align and couplings
#306
joelmeyerson
opened
3 months ago
3
raise ExternalToolError(evcouplings.utils.system.ExternalToolError: Call failed)
#305
mtopolska
closed
8 months ago
2
ResourceError when running evcouplings_dbupdate
#304
MarioAsti8
opened
9 months ago
2
"load()" has been removed, use yaml
#303
fbalo-medium
closed
2 months ago
2
Fixed typos
#302
m1ch4el0
closed
11 months ago
0
V0.2 patch
#301
zachcp
closed
8 months ago
3
Fixing possible permissions error
#300
loodvn
closed
8 months ago
4
PermissionError when rerunning a job
#299
loodvn
closed
8 months ago
1
SIFTS
#298
t9lex
opened
1 year ago
4
Complex Pipeline still Coupling Successful, but after ended with an runtime error
#297
Prasanth-Kumar87
opened
1 year ago
0
The 'sklearn' PyPI package is deprecated, use 'scikit-learn' error
#296
fbalo-medium
closed
2 months ago
8
Error in evcouplings_dbupdate
#295
Agarwalvidhu
opened
1 year ago
0
Update YAML loading code
#294
thomashopf
closed
2 months ago
1
V0.2
#293
thomashopf
closed
2 months ago
1
Fix plmc segfault handling
#292
thomashopf
closed
2 months ago
0
Fix numpy str deprecations
#291
thomashopf
closed
2 months ago
1
Error at compare stage of EV couplings complex: Unable to download and acess files from SIFT database
#290
sudhabioinfo87
closed
1 year ago
3
Fix identifier storage in Alignment class
#289
thomashopf
closed
2 months ago
1
ResourceError: issue while running EVcouplings
#288
bshrestha0
closed
1 year ago
1
parameters for supplying external alignment file in evcouplings
#287
Yogesh1-11
closed
1 year ago
1
Support a3m format in existing alignment protocol
#286
aaronkollasch
closed
1 year ago
1
KeyError: 'samples' using complex pipeline
#285
kirannazarali
opened
1 year ago
3
Feat request: Alphafold within EVCouplings
#284
zachcp
opened
1 year ago
3
fix: match plmc log style
#283
TTTPOB
closed
1 year ago
5
EVmutation vs DeepSequence
#282
Trepetsky
closed
1 year ago
1
change name inputs to bokeh
#281
zachcp
closed
1 year ago
0
Fix/uniprot api
#280
thomashopf
closed
2 years ago
0
Troubleshooting Help
#279
JodC58972
closed
1 year ago
2
Evcouplings_dbupdate ResourceError
#278
JodC58972
closed
1 year ago
5
Use scikit-learn instead of sklearn
#277
aaronkollasch
closed
2 years ago
1
Incorporate hhpred for pdb search in compare stage
#276
kpgbrock
opened
2 years ago
0
EVcouplings not compatible with Python 3.10 version
#275
kpgbrock
closed
2 years ago
3
Is hhfilter necessary?
#274
qbellamy
closed
1 year ago
2
Incompatible .model file from EVCouplings web server
#273
jsunn-y
closed
1 year ago
4
lack of explicit separator in read_csv in /mutate/protocol.py
#272
paulaberry
opened
2 years ago
3
Running EVComplex with own database
#271
katemstevens
closed
2 years ago
0
Code for running jackhmmer to produce MSA, and postprocess to get A2M.file
#270
lzhangUT
closed
2 years ago
1
Low quality mutational landscape
#269
ShahbazQalandar
closed
1 year ago
1
Non-alphabet characters aren't counted as gaps when computing sequence coverage
#268
nikkithadani
opened
2 years ago
1
Possible error in complex mixture model scoring
#267
kpgbrock
closed
3 years ago
1
Unable to perform the de novo protein structure prediction.
#266
sebel76
opened
3 years ago
2
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