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Current drawing paths only explain metabolic pathways, and we have some specific tasks that are relevant for other types of pathways like signaling pathways (listed below). But it would be good to exp…
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Hi!
Thanks for providing this package! It has been working great but I have a problem with finding some signaling pathways from Cellchat database. Out of the many signaling pathways, only a few wor…
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I am trying to plot two interactions (COL4A1_ITGA9_ITGB1, COL1A1_CD44)using netVisual_chord_gene. I only want to show these two interactions only. Here is the code below
cellchat@netP$pathways
pathw…
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Hi,
I'm having an issue with the "selectedPathways" argument in the oncoplot function, when using my own user-defined pathways. I either get the error below (with code):
```
oncoplot(maf = wgs.m…
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First, Thank you for this fantastic package! However, I am having an issue where some aspects switch the ligand cluster source while others do not.
In my data the only sources of Spp1 for Mdr2KO ar…
WayGW updated
1 month ago
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Please provide as much information as you can:
* **Suggested term label:**
~NTR: mitochondrion-hibernating ribosome tether activity~
NTR mitochondrial outer membrane tethering activity
--mi…
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Hi @sqjin,
Thank you for the great tool! However, I'm experiencing a strange bug that doesn't appear in your tutorial. When I compare two conditions, the color coding and the order of cell groups a…
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Hi @sqjin,
When I run the following code, I see that the communication probs between the conditions are not scaled.
So I think this doesnt make it legit to compare them right? Also the coloring a…
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Hi,
Thank you for developing this great package!
I'm using the RankNet function to identify the differential enriched signaling pathways between certain senders (sources.use) and receivers (targ…
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Hi,
1- New term request: Fibroblast growth factor signalling pathway
2- New term request: Positive regulation of fibroblast growth factor signalling pathway
The request is supported by Fig. 3C, 4A,…