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I followed the instructions to download the simrna software from this place, but it is invalid, I can not download to the local, how to solve this situation?
It says"https://ftp.users.genesilico.…
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Hello,
Thank you for developing such a useful tool. I have some issues with some PDB entries (like 2hol). The pdb file has some missing atoms for example in U46 there is no base and the U residue i…
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'xxx.pdb': No such file or directory.
```
rm -rf /tmp/rMSA_118633_793885579
Warning: sequences do not overlap
WARNING: vrna_hc_add_from_db: Pairing partners (40, 43) violate minimum loop size se…
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Hi! Is there still an option to have `--get_simrna_ready`? Some time (commits) ago there was a syntax available: `yapdb_parser.py --get_simrna_ready` and now I can't see this option in `rna_pdb_toolsx…
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I observe some problems with making PDB files SimRNA ready. E.g., for this command:
`yapdb_parser.py --get_simrna_ready pdb-clean.pdb`
I get an error:
```
HEADER Generated with yapdb_parser, versio…