mmagnus rna-tools issues

mmagnus / rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

http://rna-tools.online

GNU General Public License v3.0

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issues

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cif2pdb - rename in the fancy way only to A?

#148 mmagnus opened 1 month ago
0
rna_pdb_tools.py -- TypeError when running --edit option

#147 mjustynaPhD closed 8 months ago
2
`rna_pdb_tools.py --get-ss` causes NameError.

#146 TakumiOtagaki closed 10 months ago
1
rna_pdb_tools.py with fetch cif files as well

#145 mmagnus opened 1 year ago
0
rna_pdb_tools.py with fetch for given residue

#144 mmagnus opened 1 year ago
0
--rpr function causes signififant change in the coordinates

#143 akashbahai closed 1 year ago
2
rna_pdb_tools.py: command not found

#142 akashbahai closed 1 year ago
4
rna_pdb_inspect.py

#141 mmagnus opened 1 year ago
1
rna std add gaps and modified residues to output

#140 mmagnus opened 1 year ago
0
fix rpr for 1ehz [trna]

#139 mmagnus closed 1 year ago
1
calc rmsd, target and the rest, without -t ?

#138 mmagnus opened 1 year ago
0
calc rmsd: show rmsd without pandas and any other options

#137 mmagnus opened 1 year ago
0
--get-seq should be fasta fasta

#136 mmagnus opened 1 year ago
0
rna_pdb_tools.py --rpr 1ehz.pdb --replace-hetatm KeyError: "C3'"

#135 mmagnus opened 2 years ago
1
binaries for Colab

#134 mmagnus opened 2 years ago
0
for VARNA vis use varnaapi

#133 mmagnus opened 2 years ago
0
rna_calc_inf web view

#132 mmagnus closed 2 years ago
2
clarna_app - NameError: name 'ClaRNA_play_path' is not defined

#131 mmagnus opened 2 years ago
0
moderna missing data if installed with pip

#130 mmagnus closed 2 years ago
0
Make it possible for RNAStructure to get initialized with a file

#129 valentin994 opened 2 years ago
3
web: better info when rmsd is not calculated

#128 mmagnus closed 2 years ago
0
rna_minimize.py with build in --mdr

#127 mmagnus opened 2 years ago
0
missing /rna_tools/tools/clarna_play/ClaRNAlib/*

#126 pengzhangzhi closed 2 years ago
11
md min, use 10A padding

#125 mmagnus opened 2 years ago
0
web [for online version]

#124 mmagnus opened 2 years ago
0
rna-tools --fetch rp12

#123 mmagnus opened 2 years ago
0
pymol_preview_generator.py: checking the len will not work for pse files

#122 mmagnus opened 3 years ago
0
select_fragment.py wil not work with digit chains, e.g. 6

#121 mmagnus opened 3 years ago
0
fix doc compilation

#120 mmagnus closed 2 years ago
0
mq: upload the final model

#119 mmagnus opened 3 years ago
0
mq: review farfar2 wrapper

#118 mmagnus closed 3 years ago
0
add --mdr get structures ready for MD

#117 mmagnus closed 3 years ago
0
rna_pdb_toolsx.py -> rna_pdb_tools.py

#116 mmagnus opened 3 years ago
0
Missing rna_clashscore.py

#115 febos closed 3 years ago
1
mqaprnascore.py: progress to ignored + new files (now it's only to new files)

#114 mmagnus closed 3 years ago
0
mq: farna problem with csv headers

#113 mmagnus closed 3 years ago
0
rna_calc_inf.do_job in Jupyter Notebook: NameError: name 'args' is not defined

#110 mariagviegas closed 3 years ago
1
fix bug at ipknot

#109 edge2992 closed 4 years ago
1
build(deps-dev): bump node-sass from 3.3.3 to 4.14.1 in /docs

#108 dependabot[bot] closed 4 years ago
1
where is --get_simrna_ready ?

#106 filipsPL closed 4 years ago
4
rna_pdb_toolsx.py --get-seq should warn that it does not work for proteins

#104 mmagnus closed 3 years ago
1
question on additional constraints

#103 ahorvath closed 4 years ago
5
rna_calc_inf.py: must use stacking otherwise there is an error in inf_all

#102 mmagnus closed 4 years ago
0
rna_calc_rmsd.py: sort the csv file according to rmsd

#101 mmagnus closed 4 years ago
0
a new format for rna_pdb_toolsx.py --get-seq

#100 mmagnus closed 4 years ago
1
Py3

#99 mmagnus closed 5 years ago
1
--un-nmr should start from 1 ;-)

#98 mmagnus closed 5 years ago
0
Clanstix: no multiprocessing, empty scores

#97 mmagnus closed 5 years ago
0
code with new Feature for parallel processing and pvalue matrix

#95 iswaryapj closed 5 years ago
0
Fix all underscores into dashes in arguments

#94 mmagnus closed 5 years ago
0