search

mmagnus / rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
http://rna-tools.online
GNU General Public License v3.0
152 stars 43 forks source link

rna_pdb_tools.py: command not found #142

Closed akashbahai closed 1 year ago

akashbahai commented 1 year ago

Hi, I have been tryimg to setup the rna-tools on my system. I have installed it using pip, but I cannot run the rna_pdb_tools.py command on terminal. I am always getting, rna_pdb_tools.py: command not found error. Do I need to change the shebang on the top of the .py files to make it work. I have followed the instructions from here: https://rna-tools.readthedocs.io/en/latest/install-dev.html

mmagnus commented 1 year ago

Have you tried simply pip install rna-tools?

mmagnus commented 1 year ago

It seems both ways you should give your rna_pdb_tools.py file https://colab.research.google.com/drive/1c4veGVwM3NLEEI0RfdUrqdBNSCYveae1?usp=sharing https://colab.research.google.com/drive/1UHtWx3woQKR216KuY9ama-QjK5-j5ox-?usp=sharing you might reload your terminal so the shell will learn where rna_pdb_tools.py is.

akashbahai commented 1 year ago

Thanks for your response. It seems to be working now. The Pythonpath in .zshrc file was not set properly.

mmagnus commented 1 year ago

Great! Let me know if you need any more help!