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Hi!
I ran the code
```
ppr = Preprocessor({'T1':r"/mnt/d/vkr/new/nii/1/z/301_ax_t1w_3d_tfe_.nii.gz",
'T2':r"/mnt/d/vkr/new/nii/1/z/401_ax_st2w_tse.nii.gz",
…
qq-me updated
3 months ago
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Referencing from: ... to 'T1_brain_extractedBrainExtractionMask.nii.gz' file.
This file was created taking the original images from ADNI and performing a skull-stripping processing of them. We use t…
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Make MP2RAGE amenable to `antsBrainExtraction.sh`. One possibility, as @chrisfilo mentioned in #231 is using the inversion echoes https://github.com/poldracklab/pydeface/pull/15.
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**This is a(n):**
- [x] New algorithm
- [ ] Update to an existing algorithm
- [ ] Error
- [ ] Proposal to the Repository
**Details:**
The task is to add code for **skull stripping (Image p…
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Tracking issue for failures in the skull-stripping heuristic.
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Hi Dorian,
I hope you are doing well.
I am using LINDA on R version 4.3.2.
I installed ANTsR and ANTsRCore and ITK and LINDA.
On running LINDA (v 0.5.1), I get this following error during sku…
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This module will remove skull from pre-operative MRI to create brain mask used for brain surface model.
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See poldracklab/mriqc#552, poldracklab/mriqc#554, poldracklab/fmriprep#659.
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Good morning,
thanks for the awesome tool!
I have a question regarding processing MP2RAGE images acquired at 7T. I run the tutorial "Tissue classification from MP2RAGE data". Using the sample data p…
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### What version of fMRIPrep are you using?
20.2.0rc0
### What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"?
TACC run
### Details
@jbwexler …