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When i run "hecatomb install", an snakemake error occurred. Do you have any ideas how to deal with it? Thanks a lot.
[2024:06:11 18:14:25] Copying system default config to hecatomb.out/hecatomb.con…
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The documentation of how to use snakemake contains the following statement:
>The parameters set with the params keyword, can be accessed in your python script via snakemake.params[i] or snakemake.p…
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Hi, is it possible that the snakemake implementation supports single "tumour-only" samples? It looks as though it doesn't, or at least this usage is not described. I am making a snakemake workflow em…
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Currently uses the default triggers for re-running steps: `{mtime,params,input,software-env,code}`. It would be great to be able to input which ones we want to use, e.g. in case some files were manual…
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Dear @johanneskoester,
```
pip install git+https://github.com/snakemake/snakemake
Collecting git+https://github.com/snakemake/snakemake
Cloning https://github.com/snakemake/snakemake to /priva…
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Hello,
Thank you for developing this super useful pipeline. I have two isolates of Agrobacterium species sequenced with ONT. After basecalling, I got 2.2Gb data for one isolate AT1, and 1.2 Gb data f…
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I just did a new install of CLAW (and required other packages), and I'm getting an error trying to run the example:
```
#snakemake --profile profiles/slurm --use-conda --keep-going
snakemake: e…
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If PoC elena-bio/snakemake-pipelines-v2#5 is successful, create a Snakemake pipeline using PBHoney
(Depends on elena-bio/snakemake-pipelines-v2#5)
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Hi,
I am currently trying to implement the metaGEM pipeline for the assembly and metabolic reconstruction of eukaryotic (particularly fungal) genomes. I was wondering if EukRep has been integrated …
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Hi everyone,
I've been running the aMeta pipeline for over a week (I have many samples) but it got stuck in a step for days. I cancelled the run and then I run it again with --rerun-incomplete.
…