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Prompted by https://github.com/nextstrain/ncov-ingest/issues/456#issuecomment-2218083580
From my reading of [Snakemake docs on threads](https://snakemake.readthedocs.io/en/stable/snakefiles/rules.h…
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Work coming from the BGE hackathon in Leiden. Reporting of products made should go in the report here: https://docs.google.com/document/d/1if6ukMKN3xHQHAwGEQPhhgvp7iQcFnauj4W1ZtIs8wk/edit
Aim is to…
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@percyfal looks like something has happened to the latest snakemake release. Currently the aMeta testrun fails with strange error, it was not the case two weeks ago:
```
(aMeta) nikolay@dell:~/WA…
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### Lesson Title
Snakemake for Bioinformatics
### Lesson Repository URL
https://github.com/carpentries-incubator/snakemake-novice-bioinformatics
### Lesson Website URL
https://carpentries-incubat…
gperu updated
2 weeks ago
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Hello,
Thanks for the wonderful tool!
It seems to run fine on many datasets, but for me it fails for one specific dataset, with the following error report:
```
Activating conda environment: …
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The current `snakemake` workflows were developed on local machines. We need to investigate whether these workflows can be executed on SLURM clusters.
The following aspects should be investigated at…
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As previously mentioned in #9, different methods exist for ANI calculations. One of many goals for `pyani_plus` is to replicate the ANI values provided by `dnadiff`.
To integrate `dnadiff`, we need…
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Hi!!!, hope you are doing great!. The program it's giving me this error, do you know what could be the reason??
Im attaching a screenshot. Feel free, please, to ask me whatever you want.
![image](…
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The goal of `pyani-plus` is to facilitate genome comparison using ANI. Since various algorithms exist for ANI calculation (eg. aniM, aniB, fastANI), `pyani-plus` will aim to provide different methods …
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Hello everyone,
I've tried using the config.16s.yaml with the test data it works fine. However, when I try running a dry run using my own data it prompts me this error.
You will not be able to…