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hello, is there a way to upload a SingleCellExperiment or seurat object with spatial coordinates as input?
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Hi!
I have two questions about the sc reference:
1. Is it ok to us data from different species, i.e. mouse sc data to deconvolute human bulk?
2. Is it ok to mix sc data from different labs/pub…
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First off, THANK YOU to SpaCET team for creating such a useful and easy-to-use tool for spatial cancer research! It has been very valuable in our research.
My question is if it can be used for tumor…
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Hi Cecilia,
This looks like a great application! I have a few questions:
1) Does the Ksrates output provide the equation and/or lognorm fit parameters for the mixture-model fits? I'd like to be…
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Dear Authors ,
Thank you for reading my Issue.
I used SpatialDecon to deconvolute my Visium slide using a custom single cell data. I worked on them as a Seurat object as follows.
```
ann…
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library(shiny)
library(ggplot2)
ui
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I am trying to analyze the abundance, modification, and charging in tRNA of E. coli and mito tRNA of Human samples. When I use the following command for a human tRNA sample, the MimSeq code runs witho…
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Sgr_A_st_aa_03_TM1
[uid://A001/X15a0/X13c](https://almascience.org/aq/?result_view=observation&mous=uid://A001/X15a0/X13c)
* [x] Observations completed?
* [x] Delivered?
* [x] Downloaded? (specify w…
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https://mp.weixin.qq.com/s/ONYpoNdRjMXUsRQurKBDZg
ixxmu updated
2 weeks ago
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Dear Author,
I am using this script for analysis:
import SEVtras
SEVtras.sEV_recognizer(input_path='/home/yeziyang/Sc', sample_file='/home/yeziyang/Sc/Sc1_LN', out_path='/home/yeziyang/Sc/outputs…