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### Discussed in https://github.com/MannLabs/alphadia/discussions/375
Originally posted by **rednaSander** November 15, 2024
Hi,
Issue:
The software crashes when attempting to load a .spe…
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Hi,
Could you please provide me with the two-species spectral library (.tsv format is better) mentioned in your published paper "DIA-NN: Neural Networks and Interference Correction Enable Deep Prot…
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Hey Vlad,
I'm having an issue when I try to analyze samples using a spectral library generated from a previous search. For context, I'm trying to analyze the proteome of a fungal organism in the se…
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Hi Vadim and team,
I have generated a spectral library in skyline which I have exported as a report to be used in DIAnn. The reason for doing this is that I am analyzing histone PTMs and am interes…
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Operating system and version: Windows 11
Mzmine version 4.2.0
I am trying to use the Spectral Library Search function in MZmine 4.2.0. In previous versions (before version 4), I could select and l…
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@
[Linux code.txt](https://github.com/user-attachments/files/17061592/Linux.code.txt)
Hi,
I am trying DIA-NN 1.9.1 in Linux. I have managed to install, however it can't read the spectral Library …
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Things to add and change in the spectral library generation.
A collection of ideas.
- [ ] add entries to existing file
- [ ] Export isotope pattern score
- [ ] option to include/exclude RT or CC…
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Dear Vadim,
First, thanks for making a great software! We are generating DIA phosphoproteomics data using a Bruker timsTOF HT on human cells infected with viruses. We have generated an in-silico sp…
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Hello Vadim and Team,
I am using a spectral library for modified histone peptides that I built in skyline. I have some questions regarding using this library...
1. What is the best way to conver…
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Hi Vadim,
I've been having some trouble getting the main report.tsv file at the end of my DIA-NN run.
Maybe I'm doing something incorrectly, so I'll first just give you a step-by-step explanati…