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Set-up single module level tests using `nf-test`.
- [ ] Generate template for the simplest module (`annotate_driver`) @tucano :
- [ ] Switch to external R script and rely on `nextflow template…
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The `SUBCLONAL_DECONVOLUTION` sub-workflow should take as input both a single-sample and a multi-sample (if applicable) output from the `CNAqc` sub-workflow, and run with the following possible `--too…
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Thanks for your R package!
If I want to know whether the GD occurred to a certain sample or not, which metrics should I check? I just want to know the binary results (GD or not GD) of the samples. …
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Hi Giulio,
So I've been running lots of examples with mobster (very cool stuff) but I did notice a consistent pattern of model selection failure (weird beta distributions fits) when sparse and disp…
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Hello:
For the input file format, where can I get the cluster information? Which algorithm is better to get the cluster information? is the cluster column are necessary for the input files? Thanks.…
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Hi,
If I'm not wrong it seems that we can use use phylowgs trees as inputs for revolver. I went through the wiki page but am still not sure which part of outputs of phylowgs can be used and how. Coul…