caravagnalab revolver issues

caravagnalab / revolver

REVOLVER - Repeated Evolution in Cancer

https://caravagnalab.github.io/revolver/

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issues

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Obtaining CCF info from VCF file

#52 xiw588 closed 2 weeks ago
1
meaning of "min_counts > x" in plot_trajectories_per_cluster

#51 sunPi closed 10 months ago
2
one-region sample

#50 leadere closed 1 year ago
1
devtools::install_github raises permission errror?

#49 sunPi closed 1 year ago
2
should I include the synonymous mutation in the input of revolver?

#48 Yunuuuu closed 1 year ago
3
fix error when run revolver pipeline

#47 Yunuuuu opened 1 year ago
0
Error with dataframe?

#46 immuneAI closed 10 months ago
4
How to assign cluster id to samples if using binary data?

#45 sunandinisharma closed 2 years ago
1
Revolver_cluster and plot_clusters

#44 ybta2957e closed 2 years ago
2
How to prepare input data for revolver/mobster?

#43 arshah18 closed 2 years ago
7
The error occurred when I ran revolver_jackknife

#42 ybta2957e closed 10 months ago
3
About function plot_patient_trees

#41 mugpeng closed 2 years ago
3
What is the Required R Version

#40 biosunsci closed 3 years ago
2
crashed when runing "compute_clone_trees"

#39 weizhiting closed 3 years ago
2
tidy bugs in "plot_drivers_graph.R"

#38 qingjian1991 closed 3 years ago
1
How to use CNA data in construction of phylogenetic tree ?

#37 qindan2008 closed 3 years ago
2
How do I make input data with arm level event?

#36 TnakaNY closed 3 years ago
8
Does Revolver accept germline variants ?

#35 qindan2008 closed 3 years ago
2
Error: Can't subset columns that don't exist. May be a bug in complement() function inside get_features() function

#34 qindan2008 closed 3 years ago
7
Cannot Load Data

#33 EvelyneCalista closed 4 years ago
2
how to prepare binary data for revolver

#32 YunjieSong closed 4 years ago
4
Error: Can't subset columns that don't exist

#31 pdpz1 closed 3 years ago
14
plot tree

#30 zhouyao315 closed 4 years ago
12
Development

#29 luca-dex closed 4 years ago
0
Any suggestions with 'clonal cluster' from PyClone?

#28 b-niu closed 4 years ago
4
Tibbles

#27 caravagn closed 5 years ago
0
E: Error in M[df[i, "from"], df[i, "to"]] : subscript out of bounds

#26 nilcampaHU closed 5 years ago
5
revolver_plt_rclusters issue

#25 xtmgah closed 4 years ago
4
Revolver_analyzer

#24 xtmgah closed 5 years ago
5
revolver_plt_rclusters error for windows user

#23 gorden711411 closed 5 years ago
13
Remove clonevol

#22 luca-dex closed 6 years ago
0
Input file -- where to obtain the "cluster" input column for the input data.

#21 xtmgah closed 5 years ago
4
Using revolver with phylowgs outputs

#20 elifirem closed 6 years ago
3
Crash txtProgressBar

#19 danro9685 closed 3 years ago
2
Crash during phylogenetic trees reconstruction

#18 danro9685 closed 3 years ago
2
fix some bug with the imports and with roxygen

#17 luca-dex closed 6 years ago
0
Variable not defined

#16 luca-dex closed 3 years ago
3
Function define twice

#15 luca-dex closed 6 years ago
3
Remove jamPDF function, use all ggpubr for nice figure creation

#14 caravagn closed 6 years ago
1
Crash due to clonEvol code with 1 sample

#13 caravagn closed 6 years ago
7
remove rJava/xlsxJars dependency and fix issue #11

#12 ttriche closed 6 years ago
9
unused argument: cutoff.features_annotation

#11 luca-dex closed 6 years ago
3
roxygen update

#10 caravagn closed 6 years ago
0
Issue Running 'revolver_compute_phylogenies()'

#9 sahandk closed 6 years ago
5
Development

#8 luca-dex closed 6 years ago
0
Concern running revolver_analyzer() on the package provided data

#7 sahandk closed 6 years ago
5
Issue Installing REVOLVER

#6 sahandk closed 6 years ago
9
concerns/questions about error messages in call to revolver_plt_dendogram

#5 githubuserincyte closed 6 years ago
4
Minimum version

#4 luca-dex closed 6 years ago
0
Travis

#3 luca-dex closed 6 years ago
0