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Hi,
I'm running the Docker image on a Mac M1. After the FreeSurfer parcellation finishes without errors, I'm encountering this error:
> /opt/create_3d_brain_docker.sh: line 123: 4469 Illegal i…
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Seem the opacity of subcortical structure cannot control by the opacity parameter of ggseg3d.
```r
library(ggsegDefaultExtra)
library(ggseg3d)
library(dplyr)
library(tidyr)
library(plotly)
#…
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Dear community
I am new to brainsmash. I am in need of generating surrogates from the DK parcellation for an imaging transcriptomics analysis but i am unsure about how to implement this from the ex…
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maybe something like what ggseg3d is doing.
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FreeSurfer's subcortical ROIs are purely volumetric. In the focus group, Greg F (Etkin Lab) pointed to [FSL FIRST](http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIRST) for surface-based parcellations of subco…
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It turns out (I think!) you can take just about any subcortical ROI and turn it into a surface using a few FreeSurfer commands:
```
mri_tessellate aseg.mgz 17 lh.hippocampus.orig
mri_tessellate ase…
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Channel within the lymph node lined by the endothelial cells along with fibroblastic reticular cells and allows for smooth flow of lymph
Original comment by: paulnschofield
Original Ticket: [obo/mou…
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### What happened?
I'm using fMRIPrep to process HCP-YA data, which includes single band reference (SBRef) images. However, I've noticed that the SBRef images were not utilized during the motion co…
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Good morning,
I have a question regarding the generation of surrogate maps of brain atrophy while combining cortical and subcortical regions (including basal ganglia, brainstem, cerebellar lobules …
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Hello @yetianmed,
Thank you for making this atlas available in volumetric space and in cifti format. I believe in order to extract freesurfer data, I need the surface files to be in .annot format, …