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Hello SPROD author!
Tools like Tangram or gimVI can utilize scRNA-seq data to predict and impute spatial data, but they seem to be unable to denoise contaminated data. Therefore, I am considering u…
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Given the following tangram definition:
```
export default tg.target(() => {});
```
I can build it:
```
$ cargo run -- build ./a
info target tgt_01a1ak4y5p6gern0qk513etycjxh6xvv577tv25j0wbnbbmj…
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Hi,
I noticed that in your implementation of Tangram, you use the following code for training epochs:
` ad_map = tg.map_cells_to_space(adata_sc,adata_st,
mode="…
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Hello,
I have a question about the deconvolution process. As I understand it, there are 2 steps: (1) segmentation by watershed algorithms that gives the cell_count and (2) deconvolution by alignment…
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It seems that the pipeline configuration of tangram is not correct?
> ./gkno pipe fastq-tangram -r resources/homo_sapiens/current/human_reference_v37_decoys.fa -mr resources/homo_sapiens/current/mob…
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Just requesting support for Cyber Troopers Virtual-On: Oratorio Tangram.
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Greetings,
I am using Tangram to annotate my spatial data (10X) using single cell data. I would like to better understand the output of project_cell_annotations().
It says “INFO:root:spatial p…
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I am working on bam files that were generated from BWA-MEM with the output in following format:
ERR194147.232367647 65 1 9998 0 67M34S 5 18606756 0 GGATAACCCTAACCCTAACCCTAACCCTAACCCTA…
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Hello everyone
I am working on an offline navigation. I chose the Tangram project because of its simplicity and well-built, and I have successfully compiled libraries for Android and Linux so far.
…