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> auc_dis_all(all.auc.1y,
+ dataset = names(list_train_vali_Data),
+ validate_set=names(list_train_vali_Data)[-1],
+ order= names(list_train_vali_Data),
+ …
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I have a question on downloading TCGA data. I used the gdc command line tool to download the WSIs for BRCA. However, a significant number of svs files did not download correctly, resulting in a lot of…
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![微信图片_20240717144313](https://github.com/user-attachments/assets/1ccdd956-6b4f-4ec9-9095-292bc43fa549)
There seems to be a problem when it comes to gbm methods.It's not like a mistake because th…
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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Hi Sam, its me again here.
Tried running the program again with TCGA samples, but unfortunately immediately ran into this new error.
When running the preprocessing, I realise that the tag direc…
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Could you please provide the `TCGA_RCC` and `TCGA_Lung` datasets through an alternative method, such as Google Drive? I have encountered difficulties downloading them from the provided [link](https://…
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When I come to the website, it says: “All slide and diagnostic images from the TCGA program are currently unavailable for download”. Could you share the lung datasets by using a Google Cloud link? : )…
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# primary tasks
- [x] download TCGA MAF files
- [x] Map TCGA rows to proteins from our datasets
- DONT INCLUDE KIBA UNTIL WE GET ALL AFLOW CONFS (to ensure consistent test sets and so we don't …
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**Title:** Automatically label medical data from diagnosis reports
**Project Lead:** Frank Langbein, frank@langbein.org
**Description:** We wish to automatically label medical diagnosis data (MRI,…
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Dear team,
Any chance of adding TCGA annotation in the future as well ? That's very useful as well.
Regards
Najeeb