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The dynamical model (scvelo) recovers the latent time of the underlying cellular processes, then users can plot the top-likelihood genes in a heatmap form to represent the transcriptional dynamics (ht…
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**Description of the issue**
As per the message left by Jason [on slack](https://humancellatlas.slack.com/archives/CACM2JCMS/p1697485256722649?thread_ts=1697485243.091859&cid=CACM2JCMS), there are a …
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https://doi.org/10.1101/199315
>Single cell RNA sequencing (scRNA-seq) is a powerful technique to analyze the transcriptomic heterogeneities in single cell level. It is an important step for studyi…
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**First observation of cell to cell communication:**
Due to challenges such as molecular cross-talk, no more than two communication systems have been combined in a single design until now (2020).
…
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Is there a way to extract/subset specific values from the generic list-of-list (not HCA data) that meet a particular condition?
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Dear Developers,
Thank you for your work. I tried TedSim and manage to simulate a dataset as explained in the vignette.
## Context
The default implementation of TedSim allows for simulation o…
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I've attempted to assess the effects of tweaking parameters and genes selected in velocyto.R, and for my particular dataset, it seems that in the ballpark of the thresholds used for filter.genes.by.cl…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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# PMID:35536002
## Activities and Structure-Function Analysis of Fission Yeast Inositol Pyrophosphate (IPP) Kinase-Pyrophosphatase Asp1 and Its Impact on Regulation of pho1 Gene Expression
Inosi…
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Please provide as much information as you can:
* **GO term ID and Label**
* **Reason for deprecation** Put an x in the appropriate box:
- [x] The reason for obsoletion is that the term is not…