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Robel can you share a script which can generate the mapping between uniprotkb_canonical_ac and ensembl_gene_id as a csv file for all organisms in GlyGen, including the ones that will be added in the f…
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# Statement of request
From an email of Jonathan's:
> I've been seeing in a number of places people using GO annotations to classify general types of genes/proteins.
>
> We have of course HGNC,…
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To implement the Smart ID mapper feature from Raja we need to retrieve the crossreferences for all UniProt Accessions not only for the proteins we have in GlyGen. EBI needs to integrate this in their …
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"chr_id","chr_start_pos","chr_end_pos","ref_nt","alt_nt","ensembl_transcript_id","ensembl_peptide_id","uniprotkb_canonical_ac","refseq_ac","uniprotkb_aa_pos","refseq_aa_pos","ref_aa","alt_aa"
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GPAD "1.2" input:
```
UniProtKB P46934 enables GO:0004842 PMID:17996703 ECO:0000315 20180501 WB part_of(GO:0006511),part_of(GO:0006974),occurs_in(GO:0005634),has_input(UniProtKB:P24928),directly_n…
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* **PTHR ID & PTN node:**
From todays ontology editors discussion hom6 should not be annotated to methionine or threonine biosynthesis
https://github.com/geneontology/go-ontology/issues/28911#issu…
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Hello,
pretty new to R here in general but i have an issue where i want the ascesion ids that dont exist on Uniprot anymore to return NA or anything so i can fix it later. I tried to query the api o…
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Until now, we have only used our framework for ChEBI, but in principle, it should also be applicable to other data sets and prediction tasks. One such task is the prediction of protein functions as sp…
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Dear all,
The proposal has been made to obsolete GO:0039519 modulation by virus of host autophagy and children
GO:0039521 suppression by virus of host autophagy
~GO:0039520 induction by virus o…
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I think I worked out the problem with the ID mapper.
It looks like the ID mapper currently works like this:
From ID ---> Internal anchor ID (UniProtKB Canonical Ac) ---> To ID: Canonical protein …