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# Disease modeling for public health - Kalman filter in R: FKF package
[https://www.jonghoonk.com/posts/vaccine_effectiveness/](https://www.jonghoonk.com/posts/vaccine_effectiveness/)
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https://www.bmj.com/content/371/bmj.m4826
Good news! Looks like Pfizer vaccine gives ~50% efficacy 12 days after first dose (as well as the more usually touted # of 95% efficacy after 2nd dose)
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Something that was discussed during the vacineff challenge is whether we want vaccineff functions to be able to deal with grouped data out of the box.
One example would be to compute vaccine effectiv…
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The vaccines have been shown to have decreasing effectiveness against covid infection. It could be useful to incorporate into the calculator.
Here is a relevant study (though perhaps there are oth…
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The model currently retains info on when each person was vaccinated with their second dose. This allows them to carry a specific daily immune effectiveness to account for waning.
The following two p…
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"Vaccine Effectiveness: Which COVID-19 Shots Offer the Most Protection?" https://scitechdaily.com/vaccine-effectiveness-which-covid-19-shots-offer-the-most-protection/
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# Live Free or Dichotomize - Vaccine effectiveness and breakthrough cases
[https://livefreeordichotomize.com/2021/08/17/vaccine-effectiveness-and-breakthrough-cases/](https://livefreeordichotomize.…
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Have you considered modelling into your calculator the decreasing effectiveness of the vaccine as time goes on? Data from Israel has shown that the vaccines ability to protect against infection decrea…
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When ran on national node level, output of analytical pipeline is not just the HTML files, but also Excel files like `results-survival-analysis-ESP.xlsx` -- these are not shown in this baseline use ca…
stain updated
3 months ago
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Simon noticed[^1] that many studies are using research-action v1. This version notifies the following users if a restricted dataset is referenced:
https://github.com/opensafely-core/research-action…