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We would like to discuss what this button should do and what the global settings should cover in a VAME project
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In the GUI, I was able to successfully run pose segmentation but I wasn't able to advance to the next steps such as Motif Videos tab and UMAP Visualization tab.
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When running `vame.community(cohort=True, show_umap=True)` the function breaks.
The problem is happening in this line: https://github.com/EthoML/VAME/blob/59d5d730d9c8f9ca048022bd3224ddfc58891863/s…
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Hello,
Is there a way to make VAME compatible with the SLEAP file outputs instead of DLC? My lab uses SLEAP instead.
Thanks!
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I am having trouble specifying the path to the vame.egocentric aligment function using the example data suggested and I get UnboundLocalError: local variable 'data' referenced before assignment"
I …
EdH66 updated
7 months ago
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I have seen this issue in previous posts, and I have tried using the fixes suggested and even tried alexcwsmith's version of the repo, but i am still facing issues.
When I try LINCellularNeuroscien…
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When performing egocentric alignment and creating the training dataset in the "Data Organization" tab, would it be possible to generate and save a table with the following information?
Rows = Sessi…
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Hi,
Sorry for bothering again, but I have an issue with the visualisation of the egocentric alignment of my data. When I run
`vame.egocentric_alignment(config, pose_ref_index=[0,10], use_video…
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Hi,
Having an issue with the community and vame.visualization() where they do not find the npy file associated with the results of the videos. Error message:
```
vame.visualization(config)
Trace…
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Currently ensuring that this works with my personal credentials.
Please proceed with the following steps to replace these Secret Keys with those relevant for Catalyst Neuro once we gain approval of…