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2GB of RAM ain't enough when your FASTQ files are >11GB in size, like from a NovaSeq.
This line:
https://github.com/theiagen/public_health_viral_genomics/blob/main/tasks/quality_control/task_fa…
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Hi Liu,
Your Athlates is very useful to predict the HLA type. But unfortunately, I don't find where to download it.
Can you provide the link of Athlates when you have free time?
Thank you very much…
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Hello,
I’m using PHIPO for describing phenotypes correlated with SARS-CoV-2 mutations. I’ve run across a few (4-5) cases where a phenotype I’m looking for doesn’t exist in PHIPO yet, but can be fou…
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Just wondering if you have any tips for making your own database. Specifically can you use a multifasta file with different species and strains to make the database or are you better off using individ…
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Experiment: Single Cell RNAseq from 10x genomics
File Format: I have 2 Lanes (L001 and L002) and I also have for each of the lanes an R1 and R2 file
Reference Genome: Multiple HIV proviral sequences…
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Briefly comment on this issue with reasons why you are interested in this mini-project.
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1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
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## [Viral data.ipynb](https://github.com/maousi/HBV/blob/master/Viral%20data.ipynb)
You are looking at [NA values](http://localhost:8888/notebooks/Viral%20data.ipynb#NA-values). Plot 54 is great. I…